fast.genomicscompare 6,575 genera of bacteria & archaea

 

Indioceanicola profundi SCSIO 08040

Genome identifier: GCF_003568845.1

NCBI assembly name: ASM356884v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Azospirillales, Azospirillaceae, Indioceanicola, Indioceanicola profundi

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Azospirillaceae, Indioceanicola, Indioceanicola profundi

Scaffolds: 4

Genes: 4,990 Protein-coding: 4,810 RNAs: 84 pseudogenes: 96

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP030126.1 Indioceanicola profundi strain SCSIO 08040 chromosome, complete genome 3,440,599
NZ_CP030127.1 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 1,184,037
NZ_CP030128.1 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence 454,210
NZ_CP030129.1 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence 296,136

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory