fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingosinicella microcystinivorans DSM 19791

Genome identifier: GCF_003634215.1

NCBI assembly name: ASM363421v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingosinicella, Sphingosinicella microcystinivorans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingosinicellaceae, Sphingosinicella, Sphingosinicella microcystinivorans

Scaffolds: 15

Genes: 3,770 Protein-coding: 3,684 RNAs: 52 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RBWX01000001.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_110, whole genome shotgun sequence 18,382
NZ_RBWX01000002.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_111, whole genome shotgun sequence 10,173
NZ_RBWX01000003.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_112, whole genome shotgun sequence 7,950
NZ_RBWX01000004.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_113, whole genome shotgun sequence 2,267
NZ_RBWX01000005.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_114, whole genome shotgun sequence 1,619
NZ_RBWX01000006.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_115, whole genome shotgun sequence 1,201
NZ_RBWX01000007.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_101, whole genome shotgun sequence 1,899,946
NZ_RBWX01000008.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_102, whole genome shotgun sequence 678,046
NZ_RBWX01000009.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_103, whole genome shotgun sequence 483,381
NZ_RBWX01000010.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_104, whole genome shotgun sequence 366,276
NZ_RBWX01000011.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_105, whole genome shotgun sequence 200,049
NZ_RBWX01000012.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_106, whole genome shotgun sequence 135,653
NZ_RBWX01000013.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_107, whole genome shotgun sequence 75,909
NZ_RBWX01000014.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_108, whole genome shotgun sequence 58,098
NZ_RBWX01000015.1 Sphingosinicella microcystinivorans strain DSM 19791 Ga0244538_109, whole genome shotgun sequence 24,698

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory