fast.genomicscompare 6,575 genera of bacteria & archaea

 

RCIZ01 sp003666685 YM1C-6-2

Genome identifier: GCF_003666685.1

NCBI assembly name: ASM366668v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, RCIZ01, RCIZ01 sp003666685

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Mesorhizobium

Scaffolds: 53

Genes: 5,413 Protein-coding: 5,284 RNAs: 55 pseudogenes: 74

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RCIZ01000001.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_1, whole genome shotgun sequence 1,027,253
NZ_RCIZ01000002.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_2, whole genome shotgun sequence 807,717
NZ_RCIZ01000003.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_3, whole genome shotgun sequence 611,849
NZ_RCIZ01000004.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_4, whole genome shotgun sequence 461,261
NZ_RCIZ01000005.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_5, whole genome shotgun sequence 374,594
NZ_RCIZ01000006.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_6, whole genome shotgun sequence 341,785
NZ_RCIZ01000007.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_7, whole genome shotgun sequence 237,053
NZ_RCIZ01000008.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_8, whole genome shotgun sequence 222,888
NZ_RCIZ01000009.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_9, whole genome shotgun sequence 214,527
NZ_RCIZ01000010.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_10, whole genome shotgun sequence 199,034
NZ_RCIZ01000011.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_11, whole genome shotgun sequence 167,317
NZ_RCIZ01000012.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_12, whole genome shotgun sequence 136,026
NZ_RCIZ01000013.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_13, whole genome shotgun sequence 129,506
NZ_RCIZ01000014.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_14, whole genome shotgun sequence 86,268
NZ_RCIZ01000015.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_15, whole genome shotgun sequence 81,292
NZ_RCIZ01000016.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_16, whole genome shotgun sequence 63,677
NZ_RCIZ01000017.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_18, whole genome shotgun sequence 57,396
NZ_RCIZ01000018.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_19, whole genome shotgun sequence 45,193
NZ_RCIZ01000019.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_20, whole genome shotgun sequence 43,499
NZ_RCIZ01000020.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_21, whole genome shotgun sequence 40,184
NZ_RCIZ01000021.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_22, whole genome shotgun sequence 35,696
NZ_RCIZ01000022.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_23, whole genome shotgun sequence 31,378
NZ_RCIZ01000023.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_24, whole genome shotgun sequence 13,421
NZ_RCIZ01000024.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_25, whole genome shotgun sequence 6,531
NZ_RCIZ01000025.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_27, whole genome shotgun sequence 2,665
NZ_RCIZ01000026.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_28, whole genome shotgun sequence 2,120
NZ_RCIZ01000027.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_29, whole genome shotgun sequence 1,209
NZ_RCIZ01000028.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_30, whole genome shotgun sequence 952
NZ_RCIZ01000029.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_32, whole genome shotgun sequence 834
NZ_RCIZ01000030.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_33, whole genome shotgun sequence 798
NZ_RCIZ01000031.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_34, whole genome shotgun sequence 759
NZ_RCIZ01000032.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_35, whole genome shotgun sequence 689
NZ_RCIZ01000033.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_36, whole genome shotgun sequence 547
NZ_RCIZ01000034.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_37, whole genome shotgun sequence 509
NZ_RCIZ01000035.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_38, whole genome shotgun sequence 489
NZ_RCIZ01000036.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_39, whole genome shotgun sequence 454
NZ_RCIZ01000037.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_40, whole genome shotgun sequence 390
NZ_RCIZ01000038.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_41, whole genome shotgun sequence 388
NZ_RCIZ01000039.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_42, whole genome shotgun sequence 380
NZ_RCIZ01000040.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_43, whole genome shotgun sequence 372
NZ_RCIZ01000041.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_44, whole genome shotgun sequence 321
NZ_RCIZ01000042.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_45, whole genome shotgun sequence 296
NZ_RCIZ01000043.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_46, whole genome shotgun sequence 288
NZ_RCIZ01000044.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_47, whole genome shotgun sequence 285
NZ_RCIZ01000045.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_48, whole genome shotgun sequence 278
NZ_RCIZ01000046.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_49, whole genome shotgun sequence 262
NZ_RCIZ01000047.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_50, whole genome shotgun sequence 250
NZ_RCIZ01000048.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_51, whole genome shotgun sequence 242
NZ_RCIZ01000049.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_52, whole genome shotgun sequence 234
NZ_RCIZ01000050.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_53, whole genome shotgun sequence 225
NZ_RCIZ01000051.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_54, whole genome shotgun sequence 209
NZ_RCIZ01000052.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_17, whole genome shotgun sequence 59,315
NZ_RCIZ01000053.1 Mesorhizobium sp. YM1C-6-2 YM1C_Scf_17_26, whole genome shotgun sequence 523

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory