fast.genomicscompare 6,575 genera of bacteria & archaea

 

Umboniibacter marinipuniceus DSM 25080

Genome identifier: GCF_003688415.1

NCBI assembly name: ASM368841v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, DSM-25080, Umboniibacter, Umboniibacter marinipuniceus

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Cellvibrionaceae, Umboniibacter, Umboniibacter marinipuniceus

Scaffolds: 16

Genes: 2,469 Protein-coding: 2,391 RNAs: 72 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_REFJ01000001.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_101, whole genome shotgun sequence 798,165
NZ_REFJ01000002.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_102, whole genome shotgun sequence 519,484
NZ_REFJ01000003.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_103, whole genome shotgun sequence 447,233
NZ_REFJ01000004.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_104, whole genome shotgun sequence 354,089
NZ_REFJ01000005.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_105, whole genome shotgun sequence 335,494
NZ_REFJ01000006.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_106, whole genome shotgun sequence 105,767
NZ_REFJ01000007.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_107, whole genome shotgun sequence 87,570
NZ_REFJ01000008.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_108, whole genome shotgun sequence 11,813
NZ_REFJ01000009.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_109, whole genome shotgun sequence 7,429
NZ_REFJ01000010.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_110, whole genome shotgun sequence 7,296
NZ_REFJ01000011.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_111, whole genome shotgun sequence 5,318
NZ_REFJ01000012.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_112, whole genome shotgun sequence 4,116
NZ_REFJ01000013.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_113, whole genome shotgun sequence 1,848
NZ_REFJ01000014.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_114, whole genome shotgun sequence 1,472
NZ_REFJ01000015.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_115, whole genome shotgun sequence 1,209
NZ_REFJ01000016.1 Umboniibacter marinipuniceus strain DSM 25080 Ga0244554_116, whole genome shotgun sequence 1,137

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory