fast.genomicscompare 6,575 genera of bacteria & archaea

 

Desulfosoma caldarium DSM 22027

Genome identifier: GCF_003751385.1

NCBI assembly name: ASM375138v1

GTDB taxonomy: Bacteria, Desulfobacterota, Syntrophobacteria, Syntrophobacterales, DSM-9756, Desulfosoma, Desulfosoma caldarium

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Syntrophobacteria, Syntrophobacterales, Syntrophobacteraceae, Desulfosoma, Desulfosoma caldarium

Scaffolds: 17

Genes: 3,049 Protein-coding: 2,969 RNAs: 51 pseudogenes: 29

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RJVA01000001.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_110, whole genome shotgun sequence 98,706
NZ_RJVA01000002.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_111, whole genome shotgun sequence 19,958
NZ_RJVA01000003.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_112, whole genome shotgun sequence 8,193
NZ_RJVA01000004.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_113, whole genome shotgun sequence 4,401
NZ_RJVA01000005.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_114, whole genome shotgun sequence 2,769
NZ_RJVA01000006.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_115, whole genome shotgun sequence 1,611
NZ_RJVA01000007.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_116, whole genome shotgun sequence 1,127
NZ_RJVA01000008.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_117, whole genome shotgun sequence 1,024
NZ_RJVA01000009.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_101, whole genome shotgun sequence 563,153
NZ_RJVA01000010.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_102, whole genome shotgun sequence 561,307
NZ_RJVA01000011.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_103, whole genome shotgun sequence 523,125
NZ_RJVA01000012.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_104, whole genome shotgun sequence 475,144
NZ_RJVA01000013.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_105, whole genome shotgun sequence 473,899
NZ_RJVA01000014.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_106, whole genome shotgun sequence 205,529
NZ_RJVA01000015.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_107, whole genome shotgun sequence 190,335
NZ_RJVA01000016.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_108, whole genome shotgun sequence 179,339
NZ_RJVA01000017.1 Desulfosoma caldarium strain DSM 22027 Ga0244684_109, whole genome shotgun sequence 113,731

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory