fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sinobacterium caligoides DSM 100316

Genome identifier: GCF_003752585.1

NCBI assembly name: ASM375258v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, DSM-100316, Sinobacterium, Sinobacterium caligoides

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Spongiibacteraceae, Sinobacterium, Sinobacterium caligoides

Scaffolds: 11

Genes: 3,864 Protein-coding: 3,781 RNAs: 75 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RKHR01000001.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_110, whole genome shotgun sequence 49,864
NZ_RKHR01000002.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_111, whole genome shotgun sequence 4,380
NZ_RKHR01000003.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_101, whole genome shotgun sequence 1,492,182
NZ_RKHR01000004.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_102, whole genome shotgun sequence 1,338,060
NZ_RKHR01000005.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_103, whole genome shotgun sequence 560,931
NZ_RKHR01000006.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_104, whole genome shotgun sequence 341,903
NZ_RKHR01000007.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_105, whole genome shotgun sequence 208,396
NZ_RKHR01000008.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_106, whole genome shotgun sequence 161,631
NZ_RKHR01000009.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_107, whole genome shotgun sequence 83,253
NZ_RKHR01000010.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_108, whole genome shotgun sequence 82,560
NZ_RKHR01000011.1 Sinobacterium caligoides strain DSM 100316 Ga0244720_109, whole genome shotgun sequence 75,289

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory