fast.genomicscompare 6,575 genera of bacteria & archaea

 

CAJPSE01 sp003860125 OH1220_COT-178

Genome identifier: GCF_003860125.1

NCBI assembly name: ASM386012v1

GTDB taxonomy: Bacteria, Synergistota, Synergistia, Synergistales, Aminobacteriaceae, CAJPSE01, CAJPSE01 sp003860125

NCBI taxonomy: Bacteria, Synergistota, Synergistia, Synergistales, Aminobacteriaceae, Fretibacterium

Scaffolds: 105

Genes: 2,633 Protein-coding: 2,538 RNAs: 59 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RQYL01000001.1 Fretibacterium sp. OH1220_COT-178 scaffold_0, whole genome shotgun sequence 178,856
NZ_RQYL01000002.1 Fretibacterium sp. OH1220_COT-178 scaffold_1, whole genome shotgun sequence 159,612
NZ_RQYL01000003.1 Fretibacterium sp. OH1220_COT-178 scaffold_2, whole genome shotgun sequence 154,258
NZ_RQYL01000004.1 Fretibacterium sp. OH1220_COT-178 scaffold_3, whole genome shotgun sequence 177,560
NZ_RQYL01000005.1 Fretibacterium sp. OH1220_COT-178 scaffold_4, whole genome shotgun sequence 188,983
NZ_RQYL01000006.1 Fretibacterium sp. OH1220_COT-178 scaffold_5, whole genome shotgun sequence 100,629
NZ_RQYL01000007.1 Fretibacterium sp. OH1220_COT-178 scaffold_6, whole genome shotgun sequence 83,037
NZ_RQYL01000008.1 Fretibacterium sp. OH1220_COT-178 scaffold_7, whole genome shotgun sequence 99,057
NZ_RQYL01000009.1 Fretibacterium sp. OH1220_COT-178 scaffold_8, whole genome shotgun sequence 72,439
NZ_RQYL01000010.1 Fretibacterium sp. OH1220_COT-178 scaffold_9, whole genome shotgun sequence 72,236
NZ_RQYL01000011.1 Fretibacterium sp. OH1220_COT-178 scaffold_10, whole genome shotgun sequence 100,953
NZ_RQYL01000012.1 Fretibacterium sp. OH1220_COT-178 scaffold_11, whole genome shotgun sequence 69,130
NZ_RQYL01000013.1 Fretibacterium sp. OH1220_COT-178 scaffold_12, whole genome shotgun sequence 68,732
NZ_RQYL01000014.1 Fretibacterium sp. OH1220_COT-178 scaffold_13, whole genome shotgun sequence 67,827
NZ_RQYL01000015.1 Fretibacterium sp. OH1220_COT-178 scaffold_14, whole genome shotgun sequence 66,066
NZ_RQYL01000016.1 Fretibacterium sp. OH1220_COT-178 scaffold_15, whole genome shotgun sequence 60,138
NZ_RQYL01000017.1 Fretibacterium sp. OH1220_COT-178 scaffold_16, whole genome shotgun sequence 59,624
NZ_RQYL01000018.1 Fretibacterium sp. OH1220_COT-178 scaffold_17, whole genome shotgun sequence 57,504
NZ_RQYL01000019.1 Fretibacterium sp. OH1220_COT-178 scaffold_18, whole genome shotgun sequence 98,294
NZ_RQYL01000020.1 Fretibacterium sp. OH1220_COT-178 scaffold_19, whole genome shotgun sequence 60,316
NZ_RQYL01000021.1 Fretibacterium sp. OH1220_COT-178 scaffold_20, whole genome shotgun sequence 51,178
NZ_RQYL01000022.1 Fretibacterium sp. OH1220_COT-178 scaffold_21, whole genome shotgun sequence 83,205
NZ_RQYL01000023.1 Fretibacterium sp. OH1220_COT-178 scaffold_22, whole genome shotgun sequence 50,072
NZ_RQYL01000024.1 Fretibacterium sp. OH1220_COT-178 scaffold_23, whole genome shotgun sequence 47,742
NZ_RQYL01000025.1 Fretibacterium sp. OH1220_COT-178 scaffold_24, whole genome shotgun sequence 80,969
NZ_RQYL01000026.1 Fretibacterium sp. OH1220_COT-178 scaffold_25, whole genome shotgun sequence 42,998
NZ_RQYL01000027.1 Fretibacterium sp. OH1220_COT-178 scaffold_26, whole genome shotgun sequence 41,346
NZ_RQYL01000028.1 Fretibacterium sp. OH1220_COT-178 scaffold_27, whole genome shotgun sequence 39,053
NZ_RQYL01000029.1 Fretibacterium sp. OH1220_COT-178 scaffold_28, whole genome shotgun sequence 37,108
NZ_RQYL01000030.1 Fretibacterium sp. OH1220_COT-178 scaffold_29, whole genome shotgun sequence 32,321
NZ_RQYL01000031.1 Fretibacterium sp. OH1220_COT-178 scaffold_30, whole genome shotgun sequence 30,630
NZ_RQYL01000032.1 Fretibacterium sp. OH1220_COT-178 scaffold_31, whole genome shotgun sequence 27,448
NZ_RQYL01000033.1 Fretibacterium sp. OH1220_COT-178 scaffold_32, whole genome shotgun sequence 25,619
NZ_RQYL01000034.1 Fretibacterium sp. OH1220_COT-178 scaffold_33, whole genome shotgun sequence 25,441
NZ_RQYL01000035.1 Fretibacterium sp. OH1220_COT-178 scaffold_34, whole genome shotgun sequence 40,521
NZ_RQYL01000036.1 Fretibacterium sp. OH1220_COT-178 scaffold_35, whole genome shotgun sequence 21,843
NZ_RQYL01000037.1 Fretibacterium sp. OH1220_COT-178 scaffold_36, whole genome shotgun sequence 22,707
NZ_RQYL01000038.1 Fretibacterium sp. OH1220_COT-178 scaffold_37, whole genome shotgun sequence 13,901
NZ_RQYL01000039.1 Fretibacterium sp. OH1220_COT-178 scaffold_38, whole genome shotgun sequence 22,228
NZ_RQYL01000040.1 Fretibacterium sp. OH1220_COT-178 scaffold_39, whole genome shotgun sequence 10,804
NZ_RQYL01000041.1 Fretibacterium sp. OH1220_COT-178 scaffold_40, whole genome shotgun sequence 9,340
NZ_RQYL01000042.1 Fretibacterium sp. OH1220_COT-178 scaffold_41, whole genome shotgun sequence 8,406
NZ_RQYL01000043.1 Fretibacterium sp. OH1220_COT-178 scaffold_42, whole genome shotgun sequence 7,686
NZ_RQYL01000044.1 Fretibacterium sp. OH1220_COT-178 scaffold_43, whole genome shotgun sequence 8,320
NZ_RQYL01000045.1 Fretibacterium sp. OH1220_COT-178 scaffold_44, whole genome shotgun sequence 6,925
NZ_RQYL01000046.1 Fretibacterium sp. OH1220_COT-178 scaffold_45, whole genome shotgun sequence 6,267
NZ_RQYL01000047.1 Fretibacterium sp. OH1220_COT-178 scaffold_46, whole genome shotgun sequence 5,119
NZ_RQYL01000048.1 Fretibacterium sp. OH1220_COT-178 scaffold_47, whole genome shotgun sequence 4,894
NZ_RQYL01000049.1 Fretibacterium sp. OH1220_COT-178 scaffold_48, whole genome shotgun sequence 4,169
NZ_RQYL01000050.1 Fretibacterium sp. OH1220_COT-178 scaffold_49, whole genome shotgun sequence 3,846
NZ_RQYL01000051.1 Fretibacterium sp. OH1220_COT-178 scaffold_50, whole genome shotgun sequence 3,805
NZ_RQYL01000052.1 Fretibacterium sp. OH1220_COT-178 scaffold_51, whole genome shotgun sequence 3,780
NZ_RQYL01000053.1 Fretibacterium sp. OH1220_COT-178 scaffold_52, whole genome shotgun sequence 3,293
NZ_RQYL01000054.1 Fretibacterium sp. OH1220_COT-178 scaffold_53, whole genome shotgun sequence 3,752
NZ_RQYL01000055.1 Fretibacterium sp. OH1220_COT-178 scaffold_54, whole genome shotgun sequence 2,684
NZ_RQYL01000056.1 Fretibacterium sp. OH1220_COT-178 scaffold_55, whole genome shotgun sequence 2,553
NZ_RQYL01000057.1 Fretibacterium sp. OH1220_COT-178 scaffold_56, whole genome shotgun sequence 2,488
NZ_RQYL01000058.1 Fretibacterium sp. OH1220_COT-178 scaffold_57, whole genome shotgun sequence 2,462
NZ_RQYL01000059.1 Fretibacterium sp. OH1220_COT-178 scaffold_58, whole genome shotgun sequence 2,315
NZ_RQYL01000060.1 Fretibacterium sp. OH1220_COT-178 scaffold_59, whole genome shotgun sequence 2,301
NZ_RQYL01000061.1 Fretibacterium sp. OH1220_COT-178 scaffold_60, whole genome shotgun sequence 2,023
NZ_RQYL01000062.1 Fretibacterium sp. OH1220_COT-178 scaffold_61, whole genome shotgun sequence 1,951
NZ_RQYL01000063.1 Fretibacterium sp. OH1220_COT-178 scaffold_62, whole genome shotgun sequence 1,317
NZ_RQYL01000064.1 Fretibacterium sp. OH1220_COT-178 scaffold_63, whole genome shotgun sequence 1,206
NZ_RQYL01000065.1 Fretibacterium sp. OH1220_COT-178 scaffold_64, whole genome shotgun sequence 1,125
NZ_RQYL01000066.1 Fretibacterium sp. OH1220_COT-178 scaffold_65, whole genome shotgun sequence 940
NZ_RQYL01000067.1 Fretibacterium sp. OH1220_COT-178 scaffold_66, whole genome shotgun sequence 1,341
NZ_RQYL01000068.1 Fretibacterium sp. OH1220_COT-178 scaffold_67, whole genome shotgun sequence 821
NZ_RQYL01000069.1 Fretibacterium sp. OH1220_COT-178 scaffold_68, whole genome shotgun sequence 818
NZ_RQYL01000070.1 Fretibacterium sp. OH1220_COT-178 scaffold_69, whole genome shotgun sequence 742
NZ_RQYL01000071.1 Fretibacterium sp. OH1220_COT-178 scaffold_70, whole genome shotgun sequence 672
NZ_RQYL01000072.1 Fretibacterium sp. OH1220_COT-178 scaffold_71, whole genome shotgun sequence 653
NZ_RQYL01000073.1 Fretibacterium sp. OH1220_COT-178 scaffold_72, whole genome shotgun sequence 650
NZ_RQYL01000074.1 Fretibacterium sp. OH1220_COT-178 scaffold_73, whole genome shotgun sequence 650
NZ_RQYL01000075.1 Fretibacterium sp. OH1220_COT-178 scaffold_74, whole genome shotgun sequence 636
NZ_RQYL01000076.1 Fretibacterium sp. OH1220_COT-178 scaffold_75, whole genome shotgun sequence 629
NZ_RQYL01000077.1 Fretibacterium sp. OH1220_COT-178 scaffold_76, whole genome shotgun sequence 625
NZ_RQYL01000078.1 Fretibacterium sp. OH1220_COT-178 scaffold_77, whole genome shotgun sequence 623
NZ_RQYL01000079.1 Fretibacterium sp. OH1220_COT-178 scaffold_78, whole genome shotgun sequence 615
NZ_RQYL01000080.1 Fretibacterium sp. OH1220_COT-178 scaffold_79, whole genome shotgun sequence 559
NZ_RQYL01000081.1 Fretibacterium sp. OH1220_COT-178 scaffold_80, whole genome shotgun sequence 508
NZ_RQYL01000082.1 Fretibacterium sp. OH1220_COT-178 scaffold_81, whole genome shotgun sequence 485
NZ_RQYL01000083.1 Fretibacterium sp. OH1220_COT-178 scaffold_82, whole genome shotgun sequence 484
NZ_RQYL01000084.1 Fretibacterium sp. OH1220_COT-178 scaffold_83, whole genome shotgun sequence 467
NZ_RQYL01000085.1 Fretibacterium sp. OH1220_COT-178 scaffold_84, whole genome shotgun sequence 467
NZ_RQYL01000086.1 Fretibacterium sp. OH1220_COT-178 scaffold_85, whole genome shotgun sequence 460
NZ_RQYL01000087.1 Fretibacterium sp. OH1220_COT-178 scaffold_86, whole genome shotgun sequence 436
NZ_RQYL01000088.1 Fretibacterium sp. OH1220_COT-178 scaffold_87, whole genome shotgun sequence 385
NZ_RQYL01000089.1 Fretibacterium sp. OH1220_COT-178 scaffold_88, whole genome shotgun sequence 358
NZ_RQYL01000090.1 Fretibacterium sp. OH1220_COT-178 scaffold_89, whole genome shotgun sequence 340
NZ_RQYL01000091.1 Fretibacterium sp. OH1220_COT-178 scaffold_90, whole genome shotgun sequence 336
NZ_RQYL01000092.1 Fretibacterium sp. OH1220_COT-178 scaffold_91, whole genome shotgun sequence 336
NZ_RQYL01000093.1 Fretibacterium sp. OH1220_COT-178 scaffold_92, whole genome shotgun sequence 335
NZ_RQYL01000094.1 Fretibacterium sp. OH1220_COT-178 scaffold_93, whole genome shotgun sequence 331
NZ_RQYL01000095.1 Fretibacterium sp. OH1220_COT-178 scaffold_94, whole genome shotgun sequence 329
NZ_RQYL01000096.1 Fretibacterium sp. OH1220_COT-178 scaffold_95, whole genome shotgun sequence 329
NZ_RQYL01000097.1 Fretibacterium sp. OH1220_COT-178 scaffold_96, whole genome shotgun sequence 328
NZ_RQYL01000098.1 Fretibacterium sp. OH1220_COT-178 scaffold_97, whole genome shotgun sequence 328
NZ_RQYL01000099.1 Fretibacterium sp. OH1220_COT-178 scaffold_98, whole genome shotgun sequence 312
NZ_RQYL01000100.1 Fretibacterium sp. OH1220_COT-178 scaffold_99, whole genome shotgun sequence 285
NZ_RQYL01000101.1 Fretibacterium sp. OH1220_COT-178 scaffold_100, whole genome shotgun sequence 233
NZ_RQYL01000102.1 Fretibacterium sp. OH1220_COT-178 scaffold_101, whole genome shotgun sequence 225
NZ_RQYL01000103.1 Fretibacterium sp. OH1220_COT-178 scaffold_102, whole genome shotgun sequence 212
NZ_RQYL01000104.1 Fretibacterium sp. OH1220_COT-178 scaffold_103, whole genome shotgun sequence 210
NZ_RQYL01000105.1 Fretibacterium sp. OH1220_COT-178 scaffold_104, whole genome shotgun sequence 201

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory