fast.genomicscompare 6,575 genera of bacteria & archaea

 

Aestuariirhabdus litorea GTF13

Genome identifier: GCF_003864255.1

NCBI assembly name: ASM386425v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Aestuariirhabdaceae, Aestuariirhabdus, Aestuariirhabdus litorea

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Oceanospirillales, Aestuariirhabdaceae, Aestuariirhabdus, Aestuariirhabdus litorea

Scaffolds: 7

Genes: 3,422 Protein-coding: 3,349 RNAs: 64 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QWEZ01000001.1 Aestuariirhabdus litorea strain GTF13 GTF13_1, whole genome shotgun sequence 2,189,692
NZ_QWEZ01000002.1 Aestuariirhabdus litorea strain GTF13 GTF13_2, whole genome shotgun sequence 1,426,534
NZ_QWEZ01000003.1 Aestuariirhabdus litorea strain GTF13 GTF13_3, whole genome shotgun sequence 21,722
NZ_QWEZ01000004.1 Aestuariirhabdus litorea strain GTF13 GTF13_4, whole genome shotgun sequence 15,739
NZ_QWEZ01000005.1 Aestuariirhabdus litorea strain GTF13 GTF13_5, whole genome shotgun sequence 5,195
NZ_QWEZ01000006.1 Aestuariirhabdus litorea strain GTF13 GTF13_6, whole genome shotgun sequence 3,263
NZ_QWEZ01000007.1 Aestuariirhabdus litorea strain GTF13 GTF13_7, whole genome shotgun sequence 1,007

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory