fast.genomicscompare 6,575 genera of bacteria & archaea

 

RCIO01 sp004000235 Z1-4

Genome identifier: GCF_004000235.1

NCBI assembly name: ASM400023v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, RCIO01, RCIO01 sp004000235

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Mesorhizobium

Scaffolds: 29

Genes: 4,096 Protein-coding: 4,003 RNAs: 51 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RCIO01000001.1 Mesorhizobium sp. Z1-4 Scaffold1, whole genome shotgun sequence 1,424,836
NZ_RCIO01000002.1 Mesorhizobium sp. Z1-4 Scaffold2, whole genome shotgun sequence 910,802
NZ_RCIO01000003.1 Mesorhizobium sp. Z1-4 Scaffold3, whole genome shotgun sequence 631,302
NZ_RCIO01000004.1 Mesorhizobium sp. Z1-4 Scaffold4, whole genome shotgun sequence 245,555
NZ_RCIO01000005.1 Mesorhizobium sp. Z1-4 Scaffold5, whole genome shotgun sequence 232,939
NZ_RCIO01000006.1 Mesorhizobium sp. Z1-4 Scaffold6, whole genome shotgun sequence 191,160
NZ_RCIO01000007.1 Mesorhizobium sp. Z1-4 Scaffold7, whole genome shotgun sequence 113,556
NZ_RCIO01000008.1 Mesorhizobium sp. Z1-4 Scaffold8, whole genome shotgun sequence 106,543
NZ_RCIO01000009.1 Mesorhizobium sp. Z1-4 Scaffold9, whole genome shotgun sequence 103,866
NZ_RCIO01000010.1 Mesorhizobium sp. Z1-4 Scaffold10, whole genome shotgun sequence 29,865
NZ_RCIO01000011.1 Mesorhizobium sp. Z1-4 Scaffold11, whole genome shotgun sequence 17,760
NZ_RCIO01000012.1 Mesorhizobium sp. Z1-4 Scaffold12, whole genome shotgun sequence 12,780
NZ_RCIO01000013.1 Mesorhizobium sp. Z1-4 Scaffold13, whole genome shotgun sequence 8,276
NZ_RCIO01000014.1 Mesorhizobium sp. Z1-4 Scaffold14, whole genome shotgun sequence 5,901
NZ_RCIO01000015.1 Mesorhizobium sp. Z1-4 Scaffold15, whole genome shotgun sequence 4,646
NZ_RCIO01000016.1 Mesorhizobium sp. Z1-4 Scaffold16, whole genome shotgun sequence 3,741
NZ_RCIO01000017.1 Mesorhizobium sp. Z1-4 Scaffold17, whole genome shotgun sequence 2,261
NZ_RCIO01000018.1 Mesorhizobium sp. Z1-4 Scaffold18, whole genome shotgun sequence 1,974
NZ_RCIO01000019.1 Mesorhizobium sp. Z1-4 Scaffold19, whole genome shotgun sequence 1,839
NZ_RCIO01000020.1 Mesorhizobium sp. Z1-4 Scaffold20, whole genome shotgun sequence 1,671
NZ_RCIO01000021.1 Mesorhizobium sp. Z1-4 Scaffold21, whole genome shotgun sequence 1,219
NZ_RCIO01000022.1 Mesorhizobium sp. Z1-4 Scaffold22, whole genome shotgun sequence 1,172
NZ_RCIO01000023.1 Mesorhizobium sp. Z1-4 Scaffold23, whole genome shotgun sequence 1,156
NZ_RCIO01000024.1 Mesorhizobium sp. Z1-4 Scaffold24, whole genome shotgun sequence 1,032
NZ_RCIO01000025.1 Mesorhizobium sp. Z1-4 Scaffold25, whole genome shotgun sequence 940
NZ_RCIO01000026.1 Mesorhizobium sp. Z1-4 Scaffold26, whole genome shotgun sequence 769
NZ_RCIO01000027.1 Mesorhizobium sp. Z1-4 Scaffold27, whole genome shotgun sequence 375
NZ_RCIO01000028.1 Mesorhizobium sp. Z1-4 Scaffold28, whole genome shotgun sequence 241
NZ_RCIO01000029.1 Mesorhizobium sp. Z1-4 Scaffold29, whole genome shotgun sequence 240

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory