fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhizorhabdus crocodyli CCP-7

Genome identifier: GCF_004005865.1

NCBI assembly name: ASM400586v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Rhizorhabdus, Rhizorhabdus crocodyli

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas crocodyli

Scaffolds: 8

Genes: 4,728 Protein-coding: 4,646 RNAs: 54 pseudogenes: 28

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SACN01000001.1 Sphingomonas crocodyli strain CCP-7 NODE_1_length_3041622_cov_67, whole genome shotgun sequence 3,041,622
NZ_SACN01000002.1 Sphingomonas crocodyli strain CCP-7 NODE_2_length_618756_cov_72, whole genome shotgun sequence 618,756
NZ_SACN01000003.1 Sphingomonas crocodyli strain CCP-7 NODE_3_length_501060_cov_51, whole genome shotgun sequence 501,060
NZ_SACN01000004.1 Sphingomonas crocodyli strain CCP-7 NODE_4_length_270341_cov_72, whole genome shotgun sequence 270,341
NZ_SACN01000005.1 Sphingomonas crocodyli strain CCP-7 NODE_5_length_231701_cov_72, whole genome shotgun sequence 231,701
NZ_SACN01000006.1 Sphingomonas crocodyli strain CCP-7 NODE_6_length_187947_cov_74, whole genome shotgun sequence 187,947
NZ_SACN01000007.1 Sphingomonas crocodyli strain CCP-7 NODE_7_length_26437_cov_64, whole genome shotgun sequence 26,437
NZ_SACN01000008.1 Sphingomonas crocodyli strain CCP-7 NODE_8_length_5669_cov_137, whole genome shotgun sequence 5,669

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory