fast.genomicscompare 6,575 genera of bacteria & archaea

 

Clostridium_AT prolinivorans PYR-10

Genome identifier: GCF_004011155.1

NCBI assembly name: ASM401115v1

GTDB taxonomy: Bacteria, Bacillota_A, Clostridia, Clostridiales, Clostridiaceae, Clostridium_AT, Clostridium_AT prolinivorans

NCBI taxonomy: Bacteria, Bacillota, Clostridia, Eubacteriales, Clostridiaceae, Clostridium, Clostridium prolinivorans

Scaffolds: 60

Genes: 2,489 Protein-coding: 2,383 RNAs: 62 pseudogenes: 44

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RJWG01000001.1 Clostridium prolinivorans strain PYR-10 scaffold1, whole genome shotgun sequence 565,418
NZ_RJWG01000002.1 Clostridium prolinivorans strain PYR-10 scaffold2, whole genome shotgun sequence 300,011
NZ_RJWG01000003.1 Clostridium prolinivorans strain PYR-10 scaffold3, whole genome shotgun sequence 241,010
NZ_RJWG01000004.1 Clostridium prolinivorans strain PYR-10 scaffold4, whole genome shotgun sequence 240,152
NZ_RJWG01000005.1 Clostridium prolinivorans strain PYR-10 scaffold5, whole genome shotgun sequence 137,651
NZ_RJWG01000006.1 Clostridium prolinivorans strain PYR-10 scaffold6, whole genome shotgun sequence 135,609
NZ_RJWG01000007.1 Clostridium prolinivorans strain PYR-10 scaffold7, whole genome shotgun sequence 117,745
NZ_RJWG01000008.1 Clostridium prolinivorans strain PYR-10 scaffold8, whole genome shotgun sequence 108,393
NZ_RJWG01000009.1 Clostridium prolinivorans strain PYR-10 scaffold9, whole genome shotgun sequence 79,988
NZ_RJWG01000010.1 Clostridium prolinivorans strain PYR-10 scaffold10, whole genome shotgun sequence 76,901
NZ_RJWG01000011.1 Clostridium prolinivorans strain PYR-10 scaffold11, whole genome shotgun sequence 73,299
NZ_RJWG01000012.1 Clostridium prolinivorans strain PYR-10 scaffold12, whole genome shotgun sequence 64,704
NZ_RJWG01000013.1 Clostridium prolinivorans strain PYR-10 scaffold13, whole genome shotgun sequence 48,961
NZ_RJWG01000014.1 Clostridium prolinivorans strain PYR-10 scaffold14, whole genome shotgun sequence 46,769
NZ_RJWG01000015.1 Clostridium prolinivorans strain PYR-10 scaffold15, whole genome shotgun sequence 42,254
NZ_RJWG01000016.1 Clostridium prolinivorans strain PYR-10 scaffold16, whole genome shotgun sequence 41,988
NZ_RJWG01000017.1 Clostridium prolinivorans strain PYR-10 scaffold17, whole genome shotgun sequence 34,605
NZ_RJWG01000018.1 Clostridium prolinivorans strain PYR-10 scaffold18, whole genome shotgun sequence 34,583
NZ_RJWG01000019.1 Clostridium prolinivorans strain PYR-10 scaffold19, whole genome shotgun sequence 24,640
NZ_RJWG01000020.1 Clostridium prolinivorans strain PYR-10 scaffold20, whole genome shotgun sequence 22,816
NZ_RJWG01000021.1 Clostridium prolinivorans strain PYR-10 scaffold21, whole genome shotgun sequence 22,175
NZ_RJWG01000022.1 Clostridium prolinivorans strain PYR-10 scaffold22, whole genome shotgun sequence 18,288
NZ_RJWG01000023.1 Clostridium prolinivorans strain PYR-10 scaffold23, whole genome shotgun sequence 17,474
NZ_RJWG01000024.1 Clostridium prolinivorans strain PYR-10 scaffold24, whole genome shotgun sequence 16,549
NZ_RJWG01000025.1 Clostridium prolinivorans strain PYR-10 scaffold25, whole genome shotgun sequence 14,902
NZ_RJWG01000026.1 Clostridium prolinivorans strain PYR-10 scaffold26, whole genome shotgun sequence 14,902
NZ_RJWG01000027.1 Clostridium prolinivorans strain PYR-10 scaffold27, whole genome shotgun sequence 11,827
NZ_RJWG01000028.1 Clostridium prolinivorans strain PYR-10 scaffold28, whole genome shotgun sequence 8,814
NZ_RJWG01000029.1 Clostridium prolinivorans strain PYR-10 scaffold29, whole genome shotgun sequence 7,425
NZ_RJWG01000030.1 Clostridium prolinivorans strain PYR-10 scaffold30, whole genome shotgun sequence 4,953
NZ_RJWG01000031.1 Clostridium prolinivorans strain PYR-10 scaffold31, whole genome shotgun sequence 4,745
NZ_RJWG01000032.1 Clostridium prolinivorans strain PYR-10 scaffold32, whole genome shotgun sequence 3,213
NZ_RJWG01000033.1 Clostridium prolinivorans strain PYR-10 scaffold33, whole genome shotgun sequence 3,016
NZ_RJWG01000034.1 Clostridium prolinivorans strain PYR-10 scaffold34, whole genome shotgun sequence 2,939
NZ_RJWG01000035.1 Clostridium prolinivorans strain PYR-10 scaffold35, whole genome shotgun sequence 2,701
NZ_RJWG01000036.1 Clostridium prolinivorans strain PYR-10 scaffold36, whole genome shotgun sequence 2,364
NZ_RJWG01000037.1 Clostridium prolinivorans strain PYR-10 scaffold37, whole genome shotgun sequence 2,123
NZ_RJWG01000038.1 Clostridium prolinivorans strain PYR-10 scaffold38, whole genome shotgun sequence 1,886
NZ_RJWG01000039.1 Clostridium prolinivorans strain PYR-10 scaffold39, whole genome shotgun sequence 1,849
NZ_RJWG01000040.1 Clostridium prolinivorans strain PYR-10 scaffold40, whole genome shotgun sequence 1,809
NZ_RJWG01000041.1 Clostridium prolinivorans strain PYR-10 scaffold41, whole genome shotgun sequence 1,332
NZ_RJWG01000042.1 Clostridium prolinivorans strain PYR-10 scaffold42, whole genome shotgun sequence 1,140
NZ_RJWG01000043.1 Clostridium prolinivorans strain PYR-10 scaffold43, whole genome shotgun sequence 1,120
NZ_RJWG01000044.1 Clostridium prolinivorans strain PYR-10 scaffold44, whole genome shotgun sequence 1,087
NZ_RJWG01000045.1 Clostridium prolinivorans strain PYR-10 scaffold45, whole genome shotgun sequence 1,051
NZ_RJWG01000046.1 Clostridium prolinivorans strain PYR-10 scaffold46, whole genome shotgun sequence 968
NZ_RJWG01000047.1 Clostridium prolinivorans strain PYR-10 scaffold47, whole genome shotgun sequence 833
NZ_RJWG01000048.1 Clostridium prolinivorans strain PYR-10 scaffold48, whole genome shotgun sequence 747
NZ_RJWG01000049.1 Clostridium prolinivorans strain PYR-10 scaffold49, whole genome shotgun sequence 677
NZ_RJWG01000050.1 Clostridium prolinivorans strain PYR-10 scaffold50, whole genome shotgun sequence 617
NZ_RJWG01000051.1 Clostridium prolinivorans strain PYR-10 scaffold51, whole genome shotgun sequence 597
NZ_RJWG01000052.1 Clostridium prolinivorans strain PYR-10 scaffold52, whole genome shotgun sequence 564
NZ_RJWG01000053.1 Clostridium prolinivorans strain PYR-10 scaffold53, whole genome shotgun sequence 529
NZ_RJWG01000054.1 Clostridium prolinivorans strain PYR-10 scaffold54, whole genome shotgun sequence 505
NZ_RJWG01000055.1 Clostridium prolinivorans strain PYR-10 scaffold56, whole genome shotgun sequence 402
NZ_RJWG01000056.1 Clostridium prolinivorans strain PYR-10 scaffold57, whole genome shotgun sequence 352
NZ_RJWG01000057.1 Clostridium prolinivorans strain PYR-10 scaffold58, whole genome shotgun sequence 348
NZ_RJWG01000058.1 Clostridium prolinivorans strain PYR-10 scaffold59, whole genome shotgun sequence 343
NZ_RJWG01000059.1 Clostridium prolinivorans strain PYR-10 scaffold60, whole genome shotgun sequence 324
NZ_RJWG01000060.1 Clostridium prolinivorans strain PYR-10 scaffold61, whole genome shotgun sequence 306

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory