fast.genomicscompare 6,575 genera of bacteria & archaea

 

Geomonas oryzae S43

Genome identifier: GCF_004117875.1

NCBI assembly name: ASM411787v1

GTDB taxonomy: Bacteria, Desulfobacterota, Desulfuromonadia, Geobacterales, Geobacteraceae, Geomonas, Geomonas oryzae

NCBI taxonomy: Bacteria, Thermodesulfobacteriota, Desulfuromonadia, Geobacterales, Geobacteraceae, Geomonas, Geomonas oryzae

Scaffolds: 18

Genes: 4,310 Protein-coding: 4,226 RNAs: 71 pseudogenes: 13

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RAHW01000001.1 Geomonas oryzae strain S43 contig1, whole genome shotgun sequence 1,101,829
NZ_RAHW01000002.1 Geomonas oryzae strain S43 contig2, whole genome shotgun sequence 826,388
NZ_RAHW01000003.1 Geomonas oryzae strain S43 contig3, whole genome shotgun sequence 578,332
NZ_RAHW01000004.1 Geomonas oryzae strain S43 contig4, whole genome shotgun sequence 518,906
NZ_RAHW01000005.1 Geomonas oryzae strain S43 contig5, whole genome shotgun sequence 463,123
NZ_RAHW01000006.1 Geomonas oryzae strain S43 contig6, whole genome shotgun sequence 443,273
NZ_RAHW01000007.1 Geomonas oryzae strain S43 contig7, whole genome shotgun sequence 330,943
NZ_RAHW01000008.1 Geomonas oryzae strain S43 contig8, whole genome shotgun sequence 160,163
NZ_RAHW01000009.1 Geomonas oryzae strain S43 contig9, whole genome shotgun sequence 153,073
NZ_RAHW01000010.1 Geomonas oryzae strain S43 contig10, whole genome shotgun sequence 143,247
NZ_RAHW01000011.1 Geomonas oryzae strain S43 contig11, whole genome shotgun sequence 133,120
NZ_RAHW01000012.1 Geomonas oryzae strain S43 contig12, whole genome shotgun sequence 44,895
NZ_RAHW01000013.1 Geomonas oryzae strain S43 contig13, whole genome shotgun sequence 26,178
NZ_RAHW01000014.1 Geomonas oryzae strain S43 contig14, whole genome shotgun sequence 3,867
NZ_RAHW01000015.1 Geomonas oryzae strain S43 contig15, whole genome shotgun sequence 1,796
NZ_RAHW01000016.1 Geomonas oryzae strain S43 contig16, whole genome shotgun sequence 1,638
NZ_RAHW01000017.1 Geomonas oryzae strain S43 contig17, whole genome shotgun sequence 1,337
NZ_RAHW01000018.1 Geomonas oryzae strain S43 contig18, whole genome shotgun sequence 1,266

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory