fast.genomicscompare 6,575 genera of bacteria & archaea

 

Steroidobacter_A agariperforans KA5-B

Genome identifier: GCF_004138335.1

NCBI assembly name: ASM413833v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Steroidobacterales, Steroidobacteraceae, Steroidobacter_A, Steroidobacter_A agariperforans

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Nevskiales, Steroidobacteraceae, Steroidobacter, Steroidobacter agariperforans

Scaffolds: 17

Genes: 6,613 Protein-coding: 6,524 RNAs: 54 pseudogenes: 35

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_RYFW01000001.1 Peristeroidobacter agariperforans strain KA5-B Scaffold1_1, whole genome shotgun sequence 3,226,935
NZ_RYFW01000002.1 Peristeroidobacter agariperforans strain KA5-B Scaffold2_1, whole genome shotgun sequence 1,912,170
NZ_RYFW01000003.1 Peristeroidobacter agariperforans strain KA5-B Scaffold3_1, whole genome shotgun sequence 836,937
NZ_RYFW01000004.1 Peristeroidobacter agariperforans strain KA5-B Scaffold4_1, whole genome shotgun sequence 466,848
NZ_RYFW01000005.1 Peristeroidobacter agariperforans strain KA5-B Scaffold5_1, whole genome shotgun sequence 338,696
NZ_RYFW01000006.1 Peristeroidobacter agariperforans strain KA5-B Scaffold6_1, whole genome shotgun sequence 306,135
NZ_RYFW01000007.1 Peristeroidobacter agariperforans strain KA5-B Scaffold7_1, whole genome shotgun sequence 254,228
NZ_RYFW01000008.1 Peristeroidobacter agariperforans strain KA5-B Scaffold8_1, whole genome shotgun sequence 149,208
NZ_RYFW01000009.1 Peristeroidobacter agariperforans strain KA5-B Scaffold9_1, whole genome shotgun sequence 74,382
NZ_RYFW01000010.1 Peristeroidobacter agariperforans strain KA5-B Scaffold10_1, whole genome shotgun sequence 56,330
NZ_RYFW01000011.1 Peristeroidobacter agariperforans strain KA5-B Scaffold11_1, whole genome shotgun sequence 12,924
NZ_RYFW01000012.1 Peristeroidobacter agariperforans strain KA5-B Scaffold12_1, whole genome shotgun sequence 9,084
NZ_RYFW01000013.1 Peristeroidobacter agariperforans strain KA5-B Scaffold13_1, whole genome shotgun sequence 2,253
NZ_RYFW01000014.1 Peristeroidobacter agariperforans strain KA5-B Scaffold14_1, whole genome shotgun sequence 1,959
NZ_RYFW01000015.1 Peristeroidobacter agariperforans strain KA5-B Scaffold15_1, whole genome shotgun sequence 1,331
NZ_RYFW01000016.1 Peristeroidobacter agariperforans strain KA5-B Scaffold16_1, whole genome shotgun sequence 1,250
NZ_RYFW01000017.1 Peristeroidobacter agariperforans strain KA5-B Scaffold17_1, whole genome shotgun sequence 1,201

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory