fast.genomicscompare 6,575 genera of bacteria & archaea

 

SELP01 sp004145845 IMCC34160

Genome identifier: GCF_004145845.1

NCBI assembly name: ASM414584v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, SELP01, SELP01 sp004145845

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Loktanella

Scaffolds: 21

Genes: 3,716 Protein-coding: 3,637 RNAs: 53 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SELP01000001.1 Loktanella sp. IMCC34160 NODE_1_length_888611_cov_175.025218, whole genome shotgun sequence 888,611
NZ_SELP01000002.1 Loktanella sp. IMCC34160 NODE_2_length_787991_cov_159.682431, whole genome shotgun sequence 787,991
NZ_SELP01000003.1 Loktanella sp. IMCC34160 NODE_3_length_580371_cov_185.848667, whole genome shotgun sequence 580,371
NZ_SELP01000004.1 Loktanella sp. IMCC34160 NODE_4_length_505300_cov_165.749478, whole genome shotgun sequence 505,300
NZ_SELP01000005.1 Loktanella sp. IMCC34160 NODE_5_length_249615_cov_181.248669, whole genome shotgun sequence 249,615
NZ_SELP01000006.1 Loktanella sp. IMCC34160 NODE_6_length_247037_cov_297.192325, whole genome shotgun sequence 247,037
NZ_SELP01000007.1 Loktanella sp. IMCC34160 NODE_7_length_212179_cov_163.916181, whole genome shotgun sequence 212,179
NZ_SELP01000008.1 Loktanella sp. IMCC34160 NODE_8_length_131813_cov_184.179032, whole genome shotgun sequence 131,813
NZ_SELP01000009.1 Loktanella sp. IMCC34160 NODE_9_length_96463_cov_166.040511, whole genome shotgun sequence 96,463
NZ_SELP01000010.1 Loktanella sp. IMCC34160 NODE_10_length_23535_cov_183.442626, whole genome shotgun sequence 23,535
NZ_SELP01000011.1 Loktanella sp. IMCC34160 NODE_11_length_23206_cov_202.133368, whole genome shotgun sequence 23,206
NZ_SELP01000012.1 Loktanella sp. IMCC34160 NODE_12_length_16312_cov_183.323200, whole genome shotgun sequence 16,312
NZ_SELP01000013.1 Loktanella sp. IMCC34160 NODE_14_length_5488_cov_433.156128, whole genome shotgun sequence 5,488
NZ_SELP01000014.1 Loktanella sp. IMCC34160 NODE_15_length_2603_cov_329.862682, whole genome shotgun sequence 2,603
NZ_SELP01000015.1 Loktanella sp. IMCC34160 NODE_16_length_1483_cov_332.660767, whole genome shotgun sequence 1,483
NZ_SELP01000016.1 Loktanella sp. IMCC34160 NODE_17_length_1404_cov_380.824589, whole genome shotgun sequence 1,404
NZ_SELP01000017.1 Loktanella sp. IMCC34160 NODE_18_length_1190_cov_349.138288, whole genome shotgun sequence 1,190
NZ_SELP01000018.1 Loktanella sp. IMCC34160 NODE_487_length_387_cov_167.930769, whole genome shotgun sequence 387
NZ_SELP01000019.1 Loktanella sp. IMCC34160 NODE_488_length_357_cov_308.913043, whole genome shotgun sequence 357
NZ_SELP01000020.1 Loktanella sp. IMCC34160 NODE_489_length_345_cov_197.458716, whole genome shotgun sequence 345
NZ_SELP01000021.1 Loktanella sp. IMCC34160 NODE_491_length_255_cov_169.187500, whole genome shotgun sequence 255

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory