fast.genomicscompare 6,575 genera of bacteria & archaea

 

GCA-004216475 sp004216475 S3

Genome identifier: GCF_004216475.1

NCBI assembly name: ASM421647v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, GCA-004216475, GCA-004216475 sp004216475

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Thalassococcus

Scaffolds: 4

Genes: 4,849 Protein-coding: 4,762 RNAs: 50 pseudogenes: 37

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP022303.1 Thalassococcus sp. S3 chromosome, complete genome 4,797,308
NZ_CP022304.1 Thalassococcus sp. S3 plasmid pS3A, complete sequence 95,560
NZ_CP022305.1 Thalassococcus sp. S3 plasmid pS3B, complete sequence 63,231
NZ_CP022306.1 Thalassococcus sp. S3 plasmid pS3C, complete sequence 45,797

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory