fast.genomicscompare 6,575 genera of bacteria & archaea

 

Hansschlegelia quercus Dub

Genome identifier: GCF_004310425.1

NCBI assembly name: ASM431042v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Methylopilaceae, Hansschlegelia, Hansschlegelia quercus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Methylocystaceae, Hansschlegelia, Hansschlegelia quercus

Scaffolds: 17

Genes: 3,397 Protein-coding: 3,313 RNAs: 54 pseudogenes: 30

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SIUB01000001.1 Hansschlegelia quercus strain Dub NODE_1_length_843522_cov_183.220206, whole genome shotgun sequence 843,522
NZ_SIUB01000002.1 Hansschlegelia quercus strain Dub NODE_2_length_613599_cov_175.310114, whole genome shotgun sequence 613,599
NZ_SIUB01000003.1 Hansschlegelia quercus strain Dub NODE_3_length_509594_cov_183.007741, whole genome shotgun sequence 509,594
NZ_SIUB01000004.1 Hansschlegelia quercus strain Dub NODE_4_length_342415_cov_182.623112, whole genome shotgun sequence 342,415
NZ_SIUB01000005.1 Hansschlegelia quercus strain Dub NODE_5_length_303463_cov_183.881062, whole genome shotgun sequence 303,463
NZ_SIUB01000006.1 Hansschlegelia quercus strain Dub NODE_6_length_226027_cov_182.330697, whole genome shotgun sequence 226,027
NZ_SIUB01000007.1 Hansschlegelia quercus strain Dub NODE_7_length_174260_cov_188.624349, whole genome shotgun sequence 174,260
NZ_SIUB01000008.1 Hansschlegelia quercus strain Dub NODE_8_length_137804_cov_184.010448, whole genome shotgun sequence 137,804
NZ_SIUB01000009.1 Hansschlegelia quercus strain Dub NODE_9_length_127199_cov_182.485738, whole genome shotgun sequence 127,199
NZ_SIUB01000010.1 Hansschlegelia quercus strain Dub NODE_10_length_125139_cov_181.265085, whole genome shotgun sequence 125,139
NZ_SIUB01000011.1 Hansschlegelia quercus strain Dub NODE_11_length_87475_cov_189.195325, whole genome shotgun sequence 87,475
NZ_SIUB01000012.1 Hansschlegelia quercus strain Dub NODE_12_length_79480_cov_148.688261, whole genome shotgun sequence 79,480
NZ_SIUB01000013.1 Hansschlegelia quercus strain Dub NODE_15_length_5730_cov_367.303556, whole genome shotgun sequence 5,730
NZ_SIUB01000014.1 Hansschlegelia quercus strain Dub NODE_48_length_1428_cov_360.327165, whole genome shotgun sequence 1,428
NZ_SIUB01000015.1 Hansschlegelia quercus strain Dub NODE_79_length_1065_cov_373.413968, whole genome shotgun sequence 1,065
NZ_SIUB01000016.1 Hansschlegelia quercus strain Dub NODE_103_length_908_cov_359.187726, whole genome shotgun sequence 908
NZ_SIUB01000017.1 Hansschlegelia quercus strain Dub NODE_176_length_698_cov_311.159420, whole genome shotgun sequence 698

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory