fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhodothalassium salexigens DSM 2132

Genome identifier: GCF_004341375.1

NCBI assembly name: ASM434137v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Rhodothalassiaceae, Rhodothalassium, Rhodothalassium salexigens

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodothalassiales, Rhodothalassiaceae, Rhodothalassium, Rhodothalassium salexigens

Scaffolds: 23

Genes: 2,927 Protein-coding: 2,854 RNAs: 50 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SLXO01000001.1 Rhodothalassium salexigens DSM 2132 Ga0310481_101, whole genome shotgun sequence 568,237
NZ_SLXO01000002.1 Rhodothalassium salexigens DSM 2132 Ga0310481_102, whole genome shotgun sequence 489,660
NZ_SLXO01000003.1 Rhodothalassium salexigens DSM 2132 Ga0310481_103, whole genome shotgun sequence 417,344
NZ_SLXO01000004.1 Rhodothalassium salexigens DSM 2132 Ga0310481_104, whole genome shotgun sequence 303,350
NZ_SLXO01000005.1 Rhodothalassium salexigens DSM 2132 Ga0310481_105, whole genome shotgun sequence 232,830
NZ_SLXO01000006.1 Rhodothalassium salexigens DSM 2132 Ga0310481_106, whole genome shotgun sequence 195,274
NZ_SLXO01000007.1 Rhodothalassium salexigens DSM 2132 Ga0310481_107, whole genome shotgun sequence 194,982
NZ_SLXO01000008.1 Rhodothalassium salexigens DSM 2132 Ga0310481_108, whole genome shotgun sequence 189,790
NZ_SLXO01000009.1 Rhodothalassium salexigens DSM 2132 Ga0310481_109, whole genome shotgun sequence 187,887
NZ_SLXO01000010.1 Rhodothalassium salexigens DSM 2132 Ga0310481_110, whole genome shotgun sequence 107,761
NZ_SLXO01000011.1 Rhodothalassium salexigens DSM 2132 Ga0310481_111, whole genome shotgun sequence 104,075
NZ_SLXO01000012.1 Rhodothalassium salexigens DSM 2132 Ga0310481_112, whole genome shotgun sequence 91,729
NZ_SLXO01000013.1 Rhodothalassium salexigens DSM 2132 Ga0310481_113, whole genome shotgun sequence 89,290
NZ_SLXO01000014.1 Rhodothalassium salexigens DSM 2132 Ga0310481_114, whole genome shotgun sequence 62,561
NZ_SLXO01000015.1 Rhodothalassium salexigens DSM 2132 Ga0310481_115, whole genome shotgun sequence 41,029
NZ_SLXO01000016.1 Rhodothalassium salexigens DSM 2132 Ga0310481_116, whole genome shotgun sequence 19,137
NZ_SLXO01000017.1 Rhodothalassium salexigens DSM 2132 Ga0310481_117, whole genome shotgun sequence 17,372
NZ_SLXO01000018.1 Rhodothalassium salexigens DSM 2132 Ga0310481_118, whole genome shotgun sequence 10,820
NZ_SLXO01000019.1 Rhodothalassium salexigens DSM 2132 Ga0310481_119, whole genome shotgun sequence 9,443
NZ_SLXO01000020.1 Rhodothalassium salexigens DSM 2132 Ga0310481_120, whole genome shotgun sequence 9,028
NZ_SLXO01000021.1 Rhodothalassium salexigens DSM 2132 Ga0310481_121, whole genome shotgun sequence 8,941
NZ_SLXO01000022.1 Rhodothalassium salexigens DSM 2132 Ga0310481_122, whole genome shotgun sequence 5,467
NZ_SLXO01000023.1 Rhodothalassium salexigens DSM 2132 Ga0310481_123, whole genome shotgun sequence 2,749

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory