fast.genomicscompare 6,575 genera of bacteria & archaea

 

Varunaivibrio sulfuroxidans DSM 101688

Genome identifier: GCF_004341725.1

NCBI assembly name: ASM434172v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales_A, Magnetovibrionaceae, Varunaivibrio, Varunaivibrio sulfuroxidans

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Thalassospiraceae, Varunaivibrio, Varunaivibrio sulfuroxidans

Scaffolds: 20

Genes: 2,855 Protein-coding: 2,788 RNAs: 52 pseudogenes: 15

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SLZW01000001.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_101, whole genome shotgun sequence 551,878
NZ_SLZW01000002.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_102, whole genome shotgun sequence 456,646
NZ_SLZW01000003.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_103, whole genome shotgun sequence 347,146
NZ_SLZW01000004.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_104, whole genome shotgun sequence 290,890
NZ_SLZW01000005.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_105, whole genome shotgun sequence 227,492
NZ_SLZW01000006.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_106, whole genome shotgun sequence 199,162
NZ_SLZW01000007.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_107, whole genome shotgun sequence 193,994
NZ_SLZW01000008.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_108, whole genome shotgun sequence 193,787
NZ_SLZW01000009.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_109, whole genome shotgun sequence 182,321
NZ_SLZW01000010.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_110, whole genome shotgun sequence 178,777
NZ_SLZW01000011.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_111, whole genome shotgun sequence 107,801
NZ_SLZW01000012.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_112, whole genome shotgun sequence 51,227
NZ_SLZW01000013.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_113, whole genome shotgun sequence 15,841
NZ_SLZW01000014.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_114, whole genome shotgun sequence 10,655
NZ_SLZW01000015.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_115, whole genome shotgun sequence 7,924
NZ_SLZW01000016.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_116, whole genome shotgun sequence 5,935
NZ_SLZW01000017.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_117, whole genome shotgun sequence 5,857
NZ_SLZW01000018.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_118, whole genome shotgun sequence 2,947
NZ_SLZW01000019.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_119, whole genome shotgun sequence 1,946
NZ_SLZW01000020.1 Varunaivibrio sulfuroxidans strain DSM 101688 Ga0244726_120, whole genome shotgun sequence 1,219

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory