fast.genomicscompare 6,575 genera of bacteria & archaea

 

Shinella granuli DSM 18401

Genome identifier: GCF_004341885.1

NCBI assembly name: ASM434188v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Shinella, Shinella granuli

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Shinella, Shinella granuli

Scaffolds: 97

Genes: 6,446 Protein-coding: 6,285 RNAs: 56 pseudogenes: 105

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SLVX01000001.1 Shinella granuli strain DSM 18401 Ga0310514_101, whole genome shotgun sequence 664,076
NZ_SLVX01000002.1 Shinella granuli strain DSM 18401 Ga0310514_102, whole genome shotgun sequence 582,905
NZ_SLVX01000003.1 Shinella granuli strain DSM 18401 Ga0310514_103, whole genome shotgun sequence 455,856
NZ_SLVX01000004.1 Shinella granuli strain DSM 18401 Ga0310514_104, whole genome shotgun sequence 344,717
NZ_SLVX01000005.1 Shinella granuli strain DSM 18401 Ga0310514_105, whole genome shotgun sequence 342,691
NZ_SLVX01000006.1 Shinella granuli strain DSM 18401 Ga0310514_106, whole genome shotgun sequence 299,733
NZ_SLVX01000007.1 Shinella granuli strain DSM 18401 Ga0310514_107, whole genome shotgun sequence 282,110
NZ_SLVX01000008.1 Shinella granuli strain DSM 18401 Ga0310514_108, whole genome shotgun sequence 279,620
NZ_SLVX01000009.1 Shinella granuli strain DSM 18401 Ga0310514_109, whole genome shotgun sequence 209,456
NZ_SLVX01000010.1 Shinella granuli strain DSM 18401 Ga0310514_110, whole genome shotgun sequence 183,592
NZ_SLVX01000011.1 Shinella granuli strain DSM 18401 Ga0310514_111, whole genome shotgun sequence 182,030
NZ_SLVX01000012.1 Shinella granuli strain DSM 18401 Ga0310514_112, whole genome shotgun sequence 177,715
NZ_SLVX01000013.1 Shinella granuli strain DSM 18401 Ga0310514_113, whole genome shotgun sequence 170,241
NZ_SLVX01000014.1 Shinella granuli strain DSM 18401 Ga0310514_114, whole genome shotgun sequence 150,107
NZ_SLVX01000015.1 Shinella granuli strain DSM 18401 Ga0310514_115, whole genome shotgun sequence 146,877
NZ_SLVX01000016.1 Shinella granuli strain DSM 18401 Ga0310514_116, whole genome shotgun sequence 134,635
NZ_SLVX01000017.1 Shinella granuli strain DSM 18401 Ga0310514_117, whole genome shotgun sequence 132,814
NZ_SLVX01000018.1 Shinella granuli strain DSM 18401 Ga0310514_118, whole genome shotgun sequence 119,923
NZ_SLVX01000019.1 Shinella granuli strain DSM 18401 Ga0310514_119, whole genome shotgun sequence 119,550
NZ_SLVX01000020.1 Shinella granuli strain DSM 18401 Ga0310514_120, whole genome shotgun sequence 116,663
NZ_SLVX01000021.1 Shinella granuli strain DSM 18401 Ga0310514_121, whole genome shotgun sequence 113,762
NZ_SLVX01000022.1 Shinella granuli strain DSM 18401 Ga0310514_122, whole genome shotgun sequence 108,412
NZ_SLVX01000023.1 Shinella granuli strain DSM 18401 Ga0310514_123, whole genome shotgun sequence 107,342
NZ_SLVX01000024.1 Shinella granuli strain DSM 18401 Ga0310514_124, whole genome shotgun sequence 104,582
NZ_SLVX01000025.1 Shinella granuli strain DSM 18401 Ga0310514_125, whole genome shotgun sequence 85,824
NZ_SLVX01000026.1 Shinella granuli strain DSM 18401 Ga0310514_126, whole genome shotgun sequence 69,722
NZ_SLVX01000027.1 Shinella granuli strain DSM 18401 Ga0310514_127, whole genome shotgun sequence 55,810
NZ_SLVX01000028.1 Shinella granuli strain DSM 18401 Ga0310514_128, whole genome shotgun sequence 45,350
NZ_SLVX01000029.1 Shinella granuli strain DSM 18401 Ga0310514_129, whole genome shotgun sequence 42,501
NZ_SLVX01000030.1 Shinella granuli strain DSM 18401 Ga0310514_130, whole genome shotgun sequence 42,392
NZ_SLVX01000031.1 Shinella granuli strain DSM 18401 Ga0310514_131, whole genome shotgun sequence 41,856
NZ_SLVX01000032.1 Shinella granuli strain DSM 18401 Ga0310514_132, whole genome shotgun sequence 40,188
NZ_SLVX01000033.1 Shinella granuli strain DSM 18401 Ga0310514_133, whole genome shotgun sequence 38,624
NZ_SLVX01000034.1 Shinella granuli strain DSM 18401 Ga0310514_134, whole genome shotgun sequence 34,327
NZ_SLVX01000035.1 Shinella granuli strain DSM 18401 Ga0310514_135, whole genome shotgun sequence 33,655
NZ_SLVX01000036.1 Shinella granuli strain DSM 18401 Ga0310514_136, whole genome shotgun sequence 27,768
NZ_SLVX01000037.1 Shinella granuli strain DSM 18401 Ga0310514_137, whole genome shotgun sequence 27,396
NZ_SLVX01000038.1 Shinella granuli strain DSM 18401 Ga0310514_138, whole genome shotgun sequence 27,135
NZ_SLVX01000039.1 Shinella granuli strain DSM 18401 Ga0310514_139, whole genome shotgun sequence 25,659
NZ_SLVX01000040.1 Shinella granuli strain DSM 18401 Ga0310514_140, whole genome shotgun sequence 23,258
NZ_SLVX01000041.1 Shinella granuli strain DSM 18401 Ga0310514_141, whole genome shotgun sequence 20,372
NZ_SLVX01000042.1 Shinella granuli strain DSM 18401 Ga0310514_142, whole genome shotgun sequence 18,992
NZ_SLVX01000043.1 Shinella granuli strain DSM 18401 Ga0310514_143, whole genome shotgun sequence 18,151
NZ_SLVX01000044.1 Shinella granuli strain DSM 18401 Ga0310514_144, whole genome shotgun sequence 17,519
NZ_SLVX01000045.1 Shinella granuli strain DSM 18401 Ga0310514_145, whole genome shotgun sequence 17,480
NZ_SLVX01000046.1 Shinella granuli strain DSM 18401 Ga0310514_146, whole genome shotgun sequence 16,933
NZ_SLVX01000047.1 Shinella granuli strain DSM 18401 Ga0310514_147, whole genome shotgun sequence 16,603
NZ_SLVX01000048.1 Shinella granuli strain DSM 18401 Ga0310514_148, whole genome shotgun sequence 16,516
NZ_SLVX01000049.1 Shinella granuli strain DSM 18401 Ga0310514_149, whole genome shotgun sequence 15,518
NZ_SLVX01000050.1 Shinella granuli strain DSM 18401 Ga0310514_150, whole genome shotgun sequence 14,991
NZ_SLVX01000051.1 Shinella granuli strain DSM 18401 Ga0310514_151, whole genome shotgun sequence 14,508
NZ_SLVX01000052.1 Shinella granuli strain DSM 18401 Ga0310514_152, whole genome shotgun sequence 12,659
NZ_SLVX01000053.1 Shinella granuli strain DSM 18401 Ga0310514_153, whole genome shotgun sequence 12,170
NZ_SLVX01000054.1 Shinella granuli strain DSM 18401 Ga0310514_154, whole genome shotgun sequence 12,154
NZ_SLVX01000055.1 Shinella granuli strain DSM 18401 Ga0310514_155, whole genome shotgun sequence 11,808
NZ_SLVX01000056.1 Shinella granuli strain DSM 18401 Ga0310514_156, whole genome shotgun sequence 11,713
NZ_SLVX01000057.1 Shinella granuli strain DSM 18401 Ga0310514_157, whole genome shotgun sequence 10,984
NZ_SLVX01000058.1 Shinella granuli strain DSM 18401 Ga0310514_158, whole genome shotgun sequence 10,285
NZ_SLVX01000059.1 Shinella granuli strain DSM 18401 Ga0310514_159, whole genome shotgun sequence 9,297
NZ_SLVX01000060.1 Shinella granuli strain DSM 18401 Ga0310514_160, whole genome shotgun sequence 8,121
NZ_SLVX01000061.1 Shinella granuli strain DSM 18401 Ga0310514_161, whole genome shotgun sequence 6,185
NZ_SLVX01000062.1 Shinella granuli strain DSM 18401 Ga0310514_162, whole genome shotgun sequence 6,128
NZ_SLVX01000063.1 Shinella granuli strain DSM 18401 Ga0310514_163, whole genome shotgun sequence 5,625
NZ_SLVX01000064.1 Shinella granuli strain DSM 18401 Ga0310514_164, whole genome shotgun sequence 5,312
NZ_SLVX01000065.1 Shinella granuli strain DSM 18401 Ga0310514_165, whole genome shotgun sequence 5,013
NZ_SLVX01000066.1 Shinella granuli strain DSM 18401 Ga0310514_166, whole genome shotgun sequence 4,985
NZ_SLVX01000067.1 Shinella granuli strain DSM 18401 Ga0310514_167, whole genome shotgun sequence 4,807
NZ_SLVX01000068.1 Shinella granuli strain DSM 18401 Ga0310514_168, whole genome shotgun sequence 4,679
NZ_SLVX01000069.1 Shinella granuli strain DSM 18401 Ga0310514_169, whole genome shotgun sequence 4,624
NZ_SLVX01000070.1 Shinella granuli strain DSM 18401 Ga0310514_170, whole genome shotgun sequence 4,181
NZ_SLVX01000071.1 Shinella granuli strain DSM 18401 Ga0310514_171, whole genome shotgun sequence 3,953
NZ_SLVX01000072.1 Shinella granuli strain DSM 18401 Ga0310514_172, whole genome shotgun sequence 3,824
NZ_SLVX01000073.1 Shinella granuli strain DSM 18401 Ga0310514_173, whole genome shotgun sequence 3,311
NZ_SLVX01000074.1 Shinella granuli strain DSM 18401 Ga0310514_174, whole genome shotgun sequence 3,245
NZ_SLVX01000075.1 Shinella granuli strain DSM 18401 Ga0310514_175, whole genome shotgun sequence 3,081
NZ_SLVX01000076.1 Shinella granuli strain DSM 18401 Ga0310514_176, whole genome shotgun sequence 3,080
NZ_SLVX01000077.1 Shinella granuli strain DSM 18401 Ga0310514_177, whole genome shotgun sequence 2,927
NZ_SLVX01000078.1 Shinella granuli strain DSM 18401 Ga0310514_178, whole genome shotgun sequence 2,876
NZ_SLVX01000079.1 Shinella granuli strain DSM 18401 Ga0310514_179, whole genome shotgun sequence 2,834
NZ_SLVX01000080.1 Shinella granuli strain DSM 18401 Ga0310514_180, whole genome shotgun sequence 2,594
NZ_SLVX01000081.1 Shinella granuli strain DSM 18401 Ga0310514_181, whole genome shotgun sequence 2,566
NZ_SLVX01000082.1 Shinella granuli strain DSM 18401 Ga0310514_182, whole genome shotgun sequence 2,541
NZ_SLVX01000083.1 Shinella granuli strain DSM 18401 Ga0310514_183, whole genome shotgun sequence 2,507
NZ_SLVX01000084.1 Shinella granuli strain DSM 18401 Ga0310514_184, whole genome shotgun sequence 2,255
NZ_SLVX01000085.1 Shinella granuli strain DSM 18401 Ga0310514_185, whole genome shotgun sequence 2,203
NZ_SLVX01000086.1 Shinella granuli strain DSM 18401 Ga0310514_186, whole genome shotgun sequence 2,169
NZ_SLVX01000087.1 Shinella granuli strain DSM 18401 Ga0310514_187, whole genome shotgun sequence 2,094
NZ_SLVX01000088.1 Shinella granuli strain DSM 18401 Ga0310514_188, whole genome shotgun sequence 1,696
NZ_SLVX01000089.1 Shinella granuli strain DSM 18401 Ga0310514_189, whole genome shotgun sequence 1,689
NZ_SLVX01000090.1 Shinella granuli strain DSM 18401 Ga0310514_190, whole genome shotgun sequence 1,663
NZ_SLVX01000091.1 Shinella granuli strain DSM 18401 Ga0310514_191, whole genome shotgun sequence 1,603
NZ_SLVX01000092.1 Shinella granuli strain DSM 18401 Ga0310514_192, whole genome shotgun sequence 1,361
NZ_SLVX01000093.1 Shinella granuli strain DSM 18401 Ga0310514_193, whole genome shotgun sequence 1,234
NZ_SLVX01000094.1 Shinella granuli strain DSM 18401 Ga0310514_194, whole genome shotgun sequence 1,158
NZ_SLVX01000095.1 Shinella granuli strain DSM 18401 Ga0310514_195, whole genome shotgun sequence 1,068
NZ_SLVX01000096.1 Shinella granuli strain DSM 18401 Ga0310514_196, whole genome shotgun sequence 1,055
NZ_SLVX01000097.1 Shinella granuli strain DSM 18401 Ga0310514_197, whole genome shotgun sequence 1,054

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory