fast.genomicscompare 6,575 genera of bacteria & archaea

 

Dokdonella_A fugitiva A3

Genome identifier: GCF_004342425.1

NCBI assembly name: ASM434242v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Rhodanobacteraceae, Dokdonella_A, Dokdonella_A fugitiva

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Rhodanobacteraceae, Dokdonella, Dokdonella fugitiva

Scaffolds: 35

Genes: 3,684 Protein-coding: 3,587 RNAs: 52 pseudogenes: 45

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SLWQ01000001.1 Dokdonella fugitiva strain A3 Ga0310589_101, whole genome shotgun sequence 996,640
NZ_SLWQ01000002.1 Dokdonella fugitiva strain A3 Ga0310589_102, whole genome shotgun sequence 570,217
NZ_SLWQ01000003.1 Dokdonella fugitiva strain A3 Ga0310589_103, whole genome shotgun sequence 457,781
NZ_SLWQ01000004.1 Dokdonella fugitiva strain A3 Ga0310589_104, whole genome shotgun sequence 296,365
NZ_SLWQ01000005.1 Dokdonella fugitiva strain A3 Ga0310589_105, whole genome shotgun sequence 287,578
NZ_SLWQ01000006.1 Dokdonella fugitiva strain A3 Ga0310589_106, whole genome shotgun sequence 285,813
NZ_SLWQ01000007.1 Dokdonella fugitiva strain A3 Ga0310589_107, whole genome shotgun sequence 276,090
NZ_SLWQ01000008.1 Dokdonella fugitiva strain A3 Ga0310589_108, whole genome shotgun sequence 233,287
NZ_SLWQ01000009.1 Dokdonella fugitiva strain A3 Ga0310589_109, whole genome shotgun sequence 188,761
NZ_SLWQ01000010.1 Dokdonella fugitiva strain A3 Ga0310589_110, whole genome shotgun sequence 175,897
NZ_SLWQ01000011.1 Dokdonella fugitiva strain A3 Ga0310589_111, whole genome shotgun sequence 112,376
NZ_SLWQ01000012.1 Dokdonella fugitiva strain A3 Ga0310589_112, whole genome shotgun sequence 100,660
NZ_SLWQ01000013.1 Dokdonella fugitiva strain A3 Ga0310589_113, whole genome shotgun sequence 82,686
NZ_SLWQ01000014.1 Dokdonella fugitiva strain A3 Ga0310589_114, whole genome shotgun sequence 66,736
NZ_SLWQ01000015.1 Dokdonella fugitiva strain A3 Ga0310589_115, whole genome shotgun sequence 59,118
NZ_SLWQ01000016.1 Dokdonella fugitiva strain A3 Ga0310589_116, whole genome shotgun sequence 29,212
NZ_SLWQ01000017.1 Dokdonella fugitiva strain A3 Ga0310589_117, whole genome shotgun sequence 14,897
NZ_SLWQ01000018.1 Dokdonella fugitiva strain A3 Ga0310589_118, whole genome shotgun sequence 11,978
NZ_SLWQ01000019.1 Dokdonella fugitiva strain A3 Ga0310589_119, whole genome shotgun sequence 8,020
NZ_SLWQ01000020.1 Dokdonella fugitiva strain A3 Ga0310589_120, whole genome shotgun sequence 3,050
NZ_SLWQ01000021.1 Dokdonella fugitiva strain A3 Ga0310589_121, whole genome shotgun sequence 2,454
NZ_SLWQ01000022.1 Dokdonella fugitiva strain A3 Ga0310589_122, whole genome shotgun sequence 2,358
NZ_SLWQ01000023.1 Dokdonella fugitiva strain A3 Ga0310589_123, whole genome shotgun sequence 1,987
NZ_SLWQ01000024.1 Dokdonella fugitiva strain A3 Ga0310589_124, whole genome shotgun sequence 1,833
NZ_SLWQ01000025.1 Dokdonella fugitiva strain A3 Ga0310589_125, whole genome shotgun sequence 1,804
NZ_SLWQ01000026.1 Dokdonella fugitiva strain A3 Ga0310589_126, whole genome shotgun sequence 1,617
NZ_SLWQ01000027.1 Dokdonella fugitiva strain A3 Ga0310589_127, whole genome shotgun sequence 1,551
NZ_SLWQ01000028.1 Dokdonella fugitiva strain A3 Ga0310589_128, whole genome shotgun sequence 1,371
NZ_SLWQ01000029.1 Dokdonella fugitiva strain A3 Ga0310589_129, whole genome shotgun sequence 1,339
NZ_SLWQ01000030.1 Dokdonella fugitiva strain A3 Ga0310589_130, whole genome shotgun sequence 1,177
NZ_SLWQ01000031.1 Dokdonella fugitiva strain A3 Ga0310589_131, whole genome shotgun sequence 1,152
NZ_SLWQ01000032.1 Dokdonella fugitiva strain A3 Ga0310589_132, whole genome shotgun sequence 1,150
NZ_SLWQ01000033.1 Dokdonella fugitiva strain A3 Ga0310589_133, whole genome shotgun sequence 1,092
NZ_SLWQ01000034.1 Dokdonella fugitiva strain A3 Ga0310589_134, whole genome shotgun sequence 1,054
NZ_SLWQ01000035.1 Dokdonella fugitiva strain A3 Ga0310589_135, whole genome shotgun sequence 1,041

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory