fast.genomicscompare 6,575 genera of bacteria & archaea

 

J25 sp004343725 J25

Genome identifier: GCF_004343725.1

NCBI assembly name: ASM434372v1

GTDB taxonomy: Bacteria, Spirochaetota, Spirochaetia, Treponematales, Breznakiellaceae, J25, J25 sp004343725

NCBI taxonomy: Bacteria, Spirochaetota, Spirochaetia, Spirochaetales, Treponemataceae, Treponema

Scaffolds: 66

Genes: 2,720 Protein-coding: 2,646 RNAs: 51 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_PTQW01000001.1 Treponema sp. J25 NG-7853_contig_1, whole genome shotgun sequence 1,972
NZ_PTQW01000002.1 Treponema sp. J25 NG-7853_contig_2, whole genome shotgun sequence 1,844
NZ_PTQW01000003.1 Treponema sp. J25 NG-7853_contig_3, whole genome shotgun sequence 204,686
NZ_PTQW01000004.1 Treponema sp. J25 NG-7853_contig_4, whole genome shotgun sequence 2,133
NZ_PTQW01000005.1 Treponema sp. J25 NG-7853_contig_5, whole genome shotgun sequence 175,688
NZ_PTQW01000006.1 Treponema sp. J25 NG-7853_contig_6, whole genome shotgun sequence 138,225
NZ_PTQW01000007.1 Treponema sp. J25 NG-7853_contig_7, whole genome shotgun sequence 2,308
NZ_PTQW01000008.1 Treponema sp. J25 NG-7853_contig_8, whole genome shotgun sequence 23,533
NZ_PTQW01000009.1 Treponema sp. J25 NG-7853_contig_9, whole genome shotgun sequence 120,774
NZ_PTQW01000010.1 Treponema sp. J25 NG-7853_contig_10, whole genome shotgun sequence 152,260
NZ_PTQW01000011.1 Treponema sp. J25 NG-7853_contig_11, whole genome shotgun sequence 29,672
NZ_PTQW01000012.1 Treponema sp. J25 NG-7853_contig_12, whole genome shotgun sequence 196,079
NZ_PTQW01000013.1 Treponema sp. J25 NG-7853_contig_13, whole genome shotgun sequence 215,151
NZ_PTQW01000014.1 Treponema sp. J25 NG-7853_contig_14, whole genome shotgun sequence 153,464
NZ_PTQW01000015.1 Treponema sp. J25 NG-7853_contig_15, whole genome shotgun sequence 34,092
NZ_PTQW01000016.1 Treponema sp. J25 NG-7853_contig_16, whole genome shotgun sequence 93,408
NZ_PTQW01000017.1 Treponema sp. J25 NG-7853_contig_17, whole genome shotgun sequence 62,605
NZ_PTQW01000018.1 Treponema sp. J25 NG-7853_contig_18, whole genome shotgun sequence 89,964
NZ_PTQW01000019.1 Treponema sp. J25 NG-7853_contig_19, whole genome shotgun sequence 60,128
NZ_PTQW01000020.1 Treponema sp. J25 NG-7853_contig_20, whole genome shotgun sequence 73,772
NZ_PTQW01000021.1 Treponema sp. J25 NG-7853_contig_21, whole genome shotgun sequence 107,380
NZ_PTQW01000022.1 Treponema sp. J25 NG-7853_contig_22, whole genome shotgun sequence 99,743
NZ_PTQW01000023.1 Treponema sp. J25 NG-7853_contig_23, whole genome shotgun sequence 1,754
NZ_PTQW01000024.1 Treponema sp. J25 NG-7853_contig_24, whole genome shotgun sequence 43,008
NZ_PTQW01000025.1 Treponema sp. J25 NG-7853_contig_25, whole genome shotgun sequence 30,762
NZ_PTQW01000026.1 Treponema sp. J25 NG-7853_contig_26, whole genome shotgun sequence 5,041
NZ_PTQW01000027.1 Treponema sp. J25 NG-7853_contig_27, whole genome shotgun sequence 8,041
NZ_PTQW01000028.1 Treponema sp. J25 NG-7853_contig_28, whole genome shotgun sequence 41,707
NZ_PTQW01000029.1 Treponema sp. J25 NG-7853_contig_29, whole genome shotgun sequence 116,683
NZ_PTQW01000030.1 Treponema sp. J25 NG-7853_contig_30, whole genome shotgun sequence 12,408
NZ_PTQW01000031.1 Treponema sp. J25 NG-7853_contig_31, whole genome shotgun sequence 64,020
NZ_PTQW01000032.1 Treponema sp. J25 NG-7853_contig_32, whole genome shotgun sequence 73,286
NZ_PTQW01000033.1 Treponema sp. J25 NG-7853_contig_33, whole genome shotgun sequence 76,030
NZ_PTQW01000034.1 Treponema sp. J25 NG-7853_contig_34, whole genome shotgun sequence 62,976
NZ_PTQW01000035.1 Treponema sp. J25 NG-7853_contig_35, whole genome shotgun sequence 24,434
NZ_PTQW01000036.1 Treponema sp. J25 NG-7853_contig_36, whole genome shotgun sequence 27,142
NZ_PTQW01000037.1 Treponema sp. J25 NG-7853_contig_37, whole genome shotgun sequence 81,392
NZ_PTQW01000038.1 Treponema sp. J25 NG-7853_contig_38, whole genome shotgun sequence 5,942
NZ_PTQW01000039.1 Treponema sp. J25 NG-7853_contig_39, whole genome shotgun sequence 28,510
NZ_PTQW01000040.1 Treponema sp. J25 NG-7853_contig_40, whole genome shotgun sequence 13,494
NZ_PTQW01000041.1 Treponema sp. J25 NG-7853_contig_41, whole genome shotgun sequence 69,094
NZ_PTQW01000042.1 Treponema sp. J25 NG-7853_contig_42, whole genome shotgun sequence 81,754
NZ_PTQW01000043.1 Treponema sp. J25 NG-7853_contig_43, whole genome shotgun sequence 1,623
NZ_PTQW01000044.1 Treponema sp. J25 NG-7853_contig_44, whole genome shotgun sequence 12,161
NZ_PTQW01000045.1 Treponema sp. J25 NG-7853_contig_45, whole genome shotgun sequence 2,944
NZ_PTQW01000046.1 Treponema sp. J25 NG-7853_contig_46, whole genome shotgun sequence 14,743
NZ_PTQW01000047.1 Treponema sp. J25 NG-7853_contig_47, whole genome shotgun sequence 2,873
NZ_PTQW01000048.1 Treponema sp. J25 NG-7853_contig_48, whole genome shotgun sequence 30,364
NZ_PTQW01000049.1 Treponema sp. J25 NG-7853_contig_49, whole genome shotgun sequence 4,119
NZ_PTQW01000050.1 Treponema sp. J25 NG-7853_contig_50, whole genome shotgun sequence 4,396
NZ_PTQW01000051.1 Treponema sp. J25 NG-7853_contig_51, whole genome shotgun sequence 39,751
NZ_PTQW01000052.1 Treponema sp. J25 NG-7853_contig_52, whole genome shotgun sequence 2,666
NZ_PTQW01000053.1 Treponema sp. J25 NG-7853_contig_53, whole genome shotgun sequence 27,595
NZ_PTQW01000054.1 Treponema sp. J25 NG-7853_contig_54, whole genome shotgun sequence 37,241
NZ_PTQW01000055.1 Treponema sp. J25 NG-7853_contig_55, whole genome shotgun sequence 11,972
NZ_PTQW01000056.1 Treponema sp. J25 NG-7853_contig_56, whole genome shotgun sequence 35,501
NZ_PTQW01000057.1 Treponema sp. J25 NG-7853_contig_57, whole genome shotgun sequence 9,261
NZ_PTQW01000058.1 Treponema sp. J25 NG-7853_contig_58, whole genome shotgun sequence 2,017
NZ_PTQW01000059.1 Treponema sp. J25 NG-7853_contig_59, whole genome shotgun sequence 10,192
NZ_PTQW01000060.1 Treponema sp. J25 NG-7853_contig_60, whole genome shotgun sequence 2,868
NZ_PTQW01000061.1 Treponema sp. J25 NG-7853_contig_61, whole genome shotgun sequence 3,102
NZ_PTQW01000062.1 Treponema sp. J25 NG-7853_contig_62, whole genome shotgun sequence 3,230
NZ_PTQW01000063.1 Treponema sp. J25 NG-7853_contig_63, whole genome shotgun sequence 1,919
NZ_PTQW01000064.1 Treponema sp. J25 NG-7853_contig_64, whole genome shotgun sequence 7,650
NZ_PTQW01000065.1 Treponema sp. J25 NG-7853_contig_65, whole genome shotgun sequence 3,011
NZ_PTQW01000066.1 Treponema sp. J25 NG-7853_contig_66, whole genome shotgun sequence 3,062

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory