fast.genomicscompare 6,575 genera of bacteria & archaea

 

Antarcticimicrobium sediminis S4J41

Genome identifier: GCF_004348975.1

NCBI assembly name: ASM434897v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Antarcticimicrobium, Antarcticimicrobium sediminis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Antarcticimicrobium, Antarcticimicrobium sediminis

Scaffolds: 68

Genes: 4,425 Protein-coding: 4,267 RNAs: 56 pseudogenes: 102

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SMFP01000001.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold1, whole genome shotgun sequence 698,582
NZ_SMFP01000002.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold2, whole genome shotgun sequence 462,938
NZ_SMFP01000003.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold3, whole genome shotgun sequence 385,609
NZ_SMFP01000004.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold4, whole genome shotgun sequence 347,418
NZ_SMFP01000005.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold5, whole genome shotgun sequence 276,526
NZ_SMFP01000006.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold6, whole genome shotgun sequence 258,281
NZ_SMFP01000007.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold7, whole genome shotgun sequence 244,400
NZ_SMFP01000008.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold8, whole genome shotgun sequence 226,047
NZ_SMFP01000009.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold9, whole genome shotgun sequence 207,029
NZ_SMFP01000010.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold10, whole genome shotgun sequence 186,139
NZ_SMFP01000011.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold11, whole genome shotgun sequence 178,529
NZ_SMFP01000012.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold12, whole genome shotgun sequence 162,636
NZ_SMFP01000013.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold13, whole genome shotgun sequence 91,232
NZ_SMFP01000014.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold14, whole genome shotgun sequence 85,583
NZ_SMFP01000015.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold15, whole genome shotgun sequence 75,565
NZ_SMFP01000016.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold16, whole genome shotgun sequence 74,804
NZ_SMFP01000017.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold17, whole genome shotgun sequence 71,276
NZ_SMFP01000018.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold18, whole genome shotgun sequence 65,448
NZ_SMFP01000019.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold19, whole genome shotgun sequence 64,911
NZ_SMFP01000020.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold20, whole genome shotgun sequence 64,219
NZ_SMFP01000021.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold21, whole genome shotgun sequence 46,057
NZ_SMFP01000022.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold22, whole genome shotgun sequence 35,114
NZ_SMFP01000023.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold23, whole genome shotgun sequence 24,969
NZ_SMFP01000024.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold24, whole genome shotgun sequence 21,834
NZ_SMFP01000025.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold25, whole genome shotgun sequence 20,831
NZ_SMFP01000026.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold26, whole genome shotgun sequence 18,435
NZ_SMFP01000027.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold27, whole genome shotgun sequence 17,987
NZ_SMFP01000028.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold28, whole genome shotgun sequence 14,734
NZ_SMFP01000029.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold29, whole genome shotgun sequence 14,065
NZ_SMFP01000030.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold30, whole genome shotgun sequence 12,939
NZ_SMFP01000031.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold31, whole genome shotgun sequence 12,892
NZ_SMFP01000032.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold32, whole genome shotgun sequence 11,947
NZ_SMFP01000033.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold33, whole genome shotgun sequence 11,359
NZ_SMFP01000034.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold34, whole genome shotgun sequence 11,295
NZ_SMFP01000035.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold35, whole genome shotgun sequence 11,196
NZ_SMFP01000036.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold36, whole genome shotgun sequence 7,990
NZ_SMFP01000037.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold37, whole genome shotgun sequence 7,626
NZ_SMFP01000038.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold38, whole genome shotgun sequence 7,257
NZ_SMFP01000039.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold39, whole genome shotgun sequence 7,236
NZ_SMFP01000040.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold40, whole genome shotgun sequence 7,126
NZ_SMFP01000041.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold41, whole genome shotgun sequence 6,018
NZ_SMFP01000042.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold42, whole genome shotgun sequence 5,423
NZ_SMFP01000043.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold43, whole genome shotgun sequence 5,004
NZ_SMFP01000044.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold44, whole genome shotgun sequence 4,783
NZ_SMFP01000045.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold45, whole genome shotgun sequence 4,707
NZ_SMFP01000046.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold46, whole genome shotgun sequence 4,003
NZ_SMFP01000047.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold47, whole genome shotgun sequence 3,317
NZ_SMFP01000048.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold48, whole genome shotgun sequence 3,154
NZ_SMFP01000049.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold49, whole genome shotgun sequence 2,835
NZ_SMFP01000050.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold50, whole genome shotgun sequence 2,471
NZ_SMFP01000051.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold51, whole genome shotgun sequence 2,197
NZ_SMFP01000052.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold52, whole genome shotgun sequence 1,981
NZ_SMFP01000053.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold53, whole genome shotgun sequence 1,974
NZ_SMFP01000054.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold54, whole genome shotgun sequence 1,627
NZ_SMFP01000055.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold55, whole genome shotgun sequence 1,568
NZ_SMFP01000056.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold58, whole genome shotgun sequence 1,253
NZ_SMFP01000057.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold59, whole genome shotgun sequence 961
NZ_SMFP01000058.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold60, whole genome shotgun sequence 958
NZ_SMFP01000059.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold61, whole genome shotgun sequence 798
NZ_SMFP01000060.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold62, whole genome shotgun sequence 720
NZ_SMFP01000061.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold63, whole genome shotgun sequence 690
NZ_SMFP01000062.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold64, whole genome shotgun sequence 664
NZ_SMFP01000063.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold65, whole genome shotgun sequence 609
NZ_SMFP01000064.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold66, whole genome shotgun sequence 601
NZ_SMFP01000065.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold67, whole genome shotgun sequence 600
NZ_SMFP01000066.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold70, whole genome shotgun sequence 560
NZ_SMFP01000067.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold72, whole genome shotgun sequence 548
NZ_SMFP01000068.1 Antarcticimicrobium sediminis strain S4J41 T4a4_scaffold76, whole genome shotgun sequence 503

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory