fast.genomicscompare 6,575 genera of bacteria & archaea

 

Halioglobus unicus GH4-78

Genome identifier: GCF_004354085.1

NCBI assembly name: ASM435408v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Halieaceae, Halioglobus, Halioglobus unicus

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Cellvibrionales, Halieaceae, Seongchinamella, Seongchinamella unica

Scaffolds: 10

Genes: 3,799 Protein-coding: 3,738 RNAs: 47 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SMSE01000001.1 Seongchinamella unica strain GH4-78 contig1, whole genome shotgun sequence 1,609,757
NZ_SMSE01000002.1 Seongchinamella unica strain GH4-78 contig2, whole genome shotgun sequence 1,081,391
NZ_SMSE01000003.1 Seongchinamella unica strain GH4-78 contig3, whole genome shotgun sequence 737,355
NZ_SMSE01000004.1 Seongchinamella unica strain GH4-78 contig4, whole genome shotgun sequence 477,256
NZ_SMSE01000005.1 Seongchinamella unica strain GH4-78 contig5, whole genome shotgun sequence 125,375
NZ_SMSE01000006.1 Seongchinamella unica strain GH4-78 contig6, whole genome shotgun sequence 108,151
NZ_SMSE01000007.1 Seongchinamella unica strain GH4-78 contig7, whole genome shotgun sequence 28,072
NZ_SMSE01000008.1 Seongchinamella unica strain GH4-78 contig8, whole genome shotgun sequence 18,663
NZ_SMSE01000009.1 Seongchinamella unica strain GH4-78 contig9, whole genome shotgun sequence 6,061
NZ_SMSE01000010.1 Seongchinamella unica strain GH4-78 contig10, whole genome shotgun sequence 1,330

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory