fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudohoeflea suaedae YC6898

Genome identifier: GCF_004354915.1

NCBI assembly name: ASM435491v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Pseudohoeflea, Pseudohoeflea suaedae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Pseudohoeflea, Pseudohoeflea suaedae

Scaffolds: 21

Genes: 3,581 Protein-coding: 3,495 RNAs: 59 pseudogenes: 27

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SMSI01000001.1 Pseudohoeflea suaedae strain YC6898 1, whole genome shotgun sequence 2,102,496
NZ_SMSI01000002.1 Pseudohoeflea suaedae strain YC6898 2, whole genome shotgun sequence 755,678
NZ_SMSI01000003.1 Pseudohoeflea suaedae strain YC6898 3, whole genome shotgun sequence 527,233
NZ_SMSI01000004.1 Pseudohoeflea suaedae strain YC6898 4, whole genome shotgun sequence 363,614
NZ_SMSI01000005.1 Pseudohoeflea suaedae strain YC6898 5, whole genome shotgun sequence 8,364
NZ_SMSI01000006.1 Pseudohoeflea suaedae strain YC6898 6, whole genome shotgun sequence 2,679
NZ_SMSI01000007.1 Pseudohoeflea suaedae strain YC6898 7, whole genome shotgun sequence 2,171
NZ_SMSI01000008.1 Pseudohoeflea suaedae strain YC6898 8, whole genome shotgun sequence 1,952
NZ_SMSI01000009.1 Pseudohoeflea suaedae strain YC6898 9, whole genome shotgun sequence 1,873
NZ_SMSI01000010.1 Pseudohoeflea suaedae strain YC6898 10, whole genome shotgun sequence 1,680
NZ_SMSI01000011.1 Pseudohoeflea suaedae strain YC6898 11, whole genome shotgun sequence 950
NZ_SMSI01000012.1 Pseudohoeflea suaedae strain YC6898 12, whole genome shotgun sequence 670
NZ_SMSI01000013.1 Pseudohoeflea suaedae strain YC6898 13, whole genome shotgun sequence 455
NZ_SMSI01000014.1 Pseudohoeflea suaedae strain YC6898 14, whole genome shotgun sequence 357
NZ_SMSI01000015.1 Pseudohoeflea suaedae strain YC6898 15, whole genome shotgun sequence 343
NZ_SMSI01000016.1 Pseudohoeflea suaedae strain YC6898 16, whole genome shotgun sequence 338
NZ_SMSI01000017.1 Pseudohoeflea suaedae strain YC6898 17, whole genome shotgun sequence 320
NZ_SMSI01000018.1 Pseudohoeflea suaedae strain YC6898 18, whole genome shotgun sequence 262
NZ_SMSI01000019.1 Pseudohoeflea suaedae strain YC6898 19, whole genome shotgun sequence 255
NZ_SMSI01000020.1 Pseudohoeflea suaedae strain YC6898 20, whole genome shotgun sequence 253
NZ_SMSI01000021.1 Pseudohoeflea suaedae strain YC6898 21, whole genome shotgun sequence 221

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory