fast.genomicscompare 6,575 genera of bacteria & archaea

 

Halospina denitrificans DSM 15505

Genome identifier: GCF_004364635.1

NCBI assembly name: ASM436463v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Oleiphilaceae, Halospina, Halospina denitrificans

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Halospina, Halospina denitrificans

Scaffolds: 16

Genes: 3,096 Protein-coding: 3,008 RNAs: 54 pseudogenes: 34

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SOAX01000001.1 Halospina denitrificans strain DSM 15505 Ga0244530_101, whole genome shotgun sequence 774,860
NZ_SOAX01000002.1 Halospina denitrificans strain DSM 15505 Ga0244530_102, whole genome shotgun sequence 727,518
NZ_SOAX01000003.1 Halospina denitrificans strain DSM 15505 Ga0244530_103, whole genome shotgun sequence 532,498
NZ_SOAX01000004.1 Halospina denitrificans strain DSM 15505 Ga0244530_104, whole genome shotgun sequence 283,148
NZ_SOAX01000005.1 Halospina denitrificans strain DSM 15505 Ga0244530_105, whole genome shotgun sequence 255,639
NZ_SOAX01000006.1 Halospina denitrificans strain DSM 15505 Ga0244530_106, whole genome shotgun sequence 250,778
NZ_SOAX01000007.1 Halospina denitrificans strain DSM 15505 Ga0244530_107, whole genome shotgun sequence 241,995
NZ_SOAX01000008.1 Halospina denitrificans strain DSM 15505 Ga0244530_108, whole genome shotgun sequence 230,694
NZ_SOAX01000009.1 Halospina denitrificans strain DSM 15505 Ga0244530_109, whole genome shotgun sequence 5,342
NZ_SOAX01000010.1 Halospina denitrificans strain DSM 15505 Ga0244530_110, whole genome shotgun sequence 3,625
NZ_SOAX01000011.1 Halospina denitrificans strain DSM 15505 Ga0244530_111, whole genome shotgun sequence 3,357
NZ_SOAX01000012.1 Halospina denitrificans strain DSM 15505 Ga0244530_112, whole genome shotgun sequence 2,901
NZ_SOAX01000013.1 Halospina denitrificans strain DSM 15505 Ga0244530_113, whole genome shotgun sequence 1,834
NZ_SOAX01000014.1 Halospina denitrificans strain DSM 15505 Ga0244530_114, whole genome shotgun sequence 1,532
NZ_SOAX01000015.1 Halospina denitrificans strain DSM 15505 Ga0244530_115, whole genome shotgun sequence 1,267
NZ_SOAX01000016.1 Halospina denitrificans strain DSM 15505 Ga0244530_116, whole genome shotgun sequence 1,244

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory