fast.genomicscompare 6,575 genera of bacteria & archaea

 

Vitreimonas flagellata SYSU XM001

Genome identifier: GCF_004634425.1

NCBI assembly name: ASM463442v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Caulobacterales, TH1-2, Vitreimonas, Vitreimonas flagellata

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomonadales, Hyphomonadaceae, Vitreimonas, Vitreimonas flagellata

Scaffolds: 17

Genes: 3,965 Protein-coding: 3,905 RNAs: 54 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SBJL01000001.1 Vitreimonas flagellata strain SYSU XM001 NODE_1_length_1564045_cov_110.231, whole genome shotgun sequence 1,564,045
NZ_SBJL01000002.1 Vitreimonas flagellata strain SYSU XM001 NODE_2_length_984373_cov_109.863, whole genome shotgun sequence 984,373
NZ_SBJL01000003.1 Vitreimonas flagellata strain SYSU XM001 NODE_3_length_585979_cov_108.722, whole genome shotgun sequence 585,979
NZ_SBJL01000004.1 Vitreimonas flagellata strain SYSU XM001 NODE_4_length_453428_cov_209.725, whole genome shotgun sequence 453,428
NZ_SBJL01000005.1 Vitreimonas flagellata strain SYSU XM001 NODE_5_length_292171_cov_110.185, whole genome shotgun sequence 292,171
NZ_SBJL01000006.1 Vitreimonas flagellata strain SYSU XM001 NODE_6_length_16615_cov_212.947, whole genome shotgun sequence 16,615
NZ_SBJL01000007.1 Vitreimonas flagellata strain SYSU XM001 NODE_7_length_4648_cov_117.026, whole genome shotgun sequence 4,648
NZ_SBJL01000008.1 Vitreimonas flagellata strain SYSU XM001 NODE_8_length_1988_cov_669.737, whole genome shotgun sequence 1,988
NZ_SBJL01000009.1 Vitreimonas flagellata strain SYSU XM001 NODE_9_length_1757_cov_1.3362, whole genome shotgun sequence 1,757
NZ_SBJL01000010.1 Vitreimonas flagellata strain SYSU XM001 NODE_10_length_1666_cov_0.901884, whole genome shotgun sequence 1,666
NZ_SBJL01000011.1 Vitreimonas flagellata strain SYSU XM001 NODE_12_length_1583_cov_2.44162, whole genome shotgun sequence 1,583
NZ_SBJL01000012.1 Vitreimonas flagellata strain SYSU XM001 NODE_13_length_1565_cov_441.185, whole genome shotgun sequence 1,565
NZ_SBJL01000013.1 Vitreimonas flagellata strain SYSU XM001 NODE_14_length_1481_cov_1.18316, whole genome shotgun sequence 1,481
NZ_SBJL01000014.1 Vitreimonas flagellata strain SYSU XM001 NODE_15_length_1250_cov_1.76224, whole genome shotgun sequence 1,250
NZ_SBJL01000015.1 Vitreimonas flagellata strain SYSU XM001 NODE_17_length_1127_cov_0.802, whole genome shotgun sequence 1,127
NZ_SBJL01000016.1 Vitreimonas flagellata strain SYSU XM001 NODE_18_length_1118_cov_1.16953, whole genome shotgun sequence 1,118
NZ_SBJL01000017.1 Vitreimonas flagellata strain SYSU XM001 NODE_19_length_1067_cov_108.151, whole genome shotgun sequence 1,067

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory