fast.genomicscompare 6,575 genera of bacteria & archaea

 

Polymorphobacter_A arshaanensis DJ1R-1

Genome identifier: GCF_004681125.1

NCBI assembly name: ASM468112v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Polymorphobacter_A, Polymorphobacter_A arshaanensis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingosinicellaceae, Polymorphobacter, Polymorphobacter arshaanensis

Scaffolds: 10

Genes: 3,136 Protein-coding: 3,066 RNAs: 54 pseudogenes: 16

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SIHO01000001.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold1, whole genome shotgun sequence 1,330,964
NZ_SIHO01000002.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold2, whole genome shotgun sequence 1,178,364
NZ_SIHO01000003.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold3, whole genome shotgun sequence 550,540
NZ_SIHO01000004.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold4, whole genome shotgun sequence 174,384
NZ_SIHO01000005.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold5, whole genome shotgun sequence 15,768
NZ_SIHO01000006.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold6, whole genome shotgun sequence 1,937
NZ_SIHO01000007.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold7, whole genome shotgun sequence 1,677
NZ_SIHO01000008.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold8, whole genome shotgun sequence 1,545
NZ_SIHO01000009.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold9, whole genome shotgun sequence 1,422
NZ_SIHO01000010.1 Polymorphobacter arshaanensis strain DJ1R-1 Scaffold10, whole genome shotgun sequence 1,221

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory