fast.genomicscompare 6,575 genera of bacteria & archaea

 

Sphingomonas_L flavalba ZLT-5

Genome identifier: GCF_004796535.1

NCBI assembly name: ASM479653v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas_L, Sphingomonas_L flavalba

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Sphingomonas, Sphingomonas flavalba

Scaffolds: 35

Genes: 2,939 Protein-coding: 2,846 RNAs: 51 pseudogenes: 42

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SPHY01000001.1 Sphingomonas flavalba strain ZLT-5 Scaffold1, whole genome shotgun sequence 383,501
NZ_SPHY01000002.1 Sphingomonas flavalba strain ZLT-5 Scaffold2, whole genome shotgun sequence 363,511
NZ_SPHY01000003.1 Sphingomonas flavalba strain ZLT-5 Scaffold3, whole genome shotgun sequence 341,021
NZ_SPHY01000004.1 Sphingomonas flavalba strain ZLT-5 Scaffold4, whole genome shotgun sequence 233,179
NZ_SPHY01000005.1 Sphingomonas flavalba strain ZLT-5 Scaffold5, whole genome shotgun sequence 192,526
NZ_SPHY01000006.1 Sphingomonas flavalba strain ZLT-5 Scaffold6, whole genome shotgun sequence 188,992
NZ_SPHY01000007.1 Sphingomonas flavalba strain ZLT-5 Scaffold7, whole genome shotgun sequence 170,995
NZ_SPHY01000008.1 Sphingomonas flavalba strain ZLT-5 Scaffold8, whole genome shotgun sequence 163,429
NZ_SPHY01000009.1 Sphingomonas flavalba strain ZLT-5 Scaffold9, whole genome shotgun sequence 152,946
NZ_SPHY01000010.1 Sphingomonas flavalba strain ZLT-5 Scaffold10, whole genome shotgun sequence 114,719
NZ_SPHY01000011.1 Sphingomonas flavalba strain ZLT-5 Scaffold11, whole genome shotgun sequence 96,205
NZ_SPHY01000012.1 Sphingomonas flavalba strain ZLT-5 Scaffold12, whole genome shotgun sequence 82,595
NZ_SPHY01000013.1 Sphingomonas flavalba strain ZLT-5 Scaffold13, whole genome shotgun sequence 75,617
NZ_SPHY01000014.1 Sphingomonas flavalba strain ZLT-5 Scaffold14, whole genome shotgun sequence 71,519
NZ_SPHY01000015.1 Sphingomonas flavalba strain ZLT-5 Scaffold15, whole genome shotgun sequence 65,164
NZ_SPHY01000016.1 Sphingomonas flavalba strain ZLT-5 Scaffold16, whole genome shotgun sequence 49,420
NZ_SPHY01000017.1 Sphingomonas flavalba strain ZLT-5 Scaffold17, whole genome shotgun sequence 38,290
NZ_SPHY01000018.1 Sphingomonas flavalba strain ZLT-5 Scaffold18, whole genome shotgun sequence 38,285
NZ_SPHY01000019.1 Sphingomonas flavalba strain ZLT-5 Scaffold19, whole genome shotgun sequence 37,254
NZ_SPHY01000020.1 Sphingomonas flavalba strain ZLT-5 Scaffold20, whole genome shotgun sequence 36,091
NZ_SPHY01000021.1 Sphingomonas flavalba strain ZLT-5 Scaffold21, whole genome shotgun sequence 27,091
NZ_SPHY01000022.1 Sphingomonas flavalba strain ZLT-5 Scaffold22, whole genome shotgun sequence 25,657
NZ_SPHY01000023.1 Sphingomonas flavalba strain ZLT-5 Scaffold23, whole genome shotgun sequence 16,130
NZ_SPHY01000024.1 Sphingomonas flavalba strain ZLT-5 Scaffold24, whole genome shotgun sequence 15,786
NZ_SPHY01000025.1 Sphingomonas flavalba strain ZLT-5 Scaffold25, whole genome shotgun sequence 14,609
NZ_SPHY01000026.1 Sphingomonas flavalba strain ZLT-5 Scaffold26, whole genome shotgun sequence 11,652
NZ_SPHY01000027.1 Sphingomonas flavalba strain ZLT-5 Scaffold27, whole genome shotgun sequence 11,103
NZ_SPHY01000028.1 Sphingomonas flavalba strain ZLT-5 Scaffold28, whole genome shotgun sequence 9,939
NZ_SPHY01000029.1 Sphingomonas flavalba strain ZLT-5 Scaffold29, whole genome shotgun sequence 9,647
NZ_SPHY01000030.1 Sphingomonas flavalba strain ZLT-5 Scaffold30, whole genome shotgun sequence 9,425
NZ_SPHY01000031.1 Sphingomonas flavalba strain ZLT-5 Scaffold31, whole genome shotgun sequence 9,170
NZ_SPHY01000032.1 Sphingomonas flavalba strain ZLT-5 Scaffold32, whole genome shotgun sequence 8,861
NZ_SPHY01000033.1 Sphingomonas flavalba strain ZLT-5 Scaffold33, whole genome shotgun sequence 5,409
NZ_SPHY01000034.1 Sphingomonas flavalba strain ZLT-5 Scaffold34, whole genome shotgun sequence 790
NZ_SPHY01000035.1 Sphingomonas flavalba strain ZLT-5 Scaffold35, whole genome shotgun sequence 568

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory