fast.genomicscompare 6,575 genera of bacteria & archaea

 

Gemmobacter_D aestuarii CC-PW-75

Genome identifier: GCF_004799285.1

NCBI assembly name: ASM479928v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Gemmobacter_D, Gemmobacter_D aestuarii

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Gemmobacter, Gemmobacter aestuarii

Scaffolds: 12

Genes: 3,589 Protein-coding: 3,513 RNAs: 53 pseudogenes: 23

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SSND01000001.1 Gemmobacter aestuarii strain CC-PW-75 contig01, whole genome shotgun sequence 1,829,759
NZ_SSND01000002.1 Gemmobacter aestuarii strain CC-PW-75 contig02, whole genome shotgun sequence 519,418
NZ_SSND01000003.1 Gemmobacter aestuarii strain CC-PW-75 contig03, whole genome shotgun sequence 515,814
NZ_SSND01000004.1 Gemmobacter aestuarii strain CC-PW-75 contig04, whole genome shotgun sequence 421,714
NZ_SSND01000005.1 Gemmobacter aestuarii strain CC-PW-75 contig05, whole genome shotgun sequence 285,040
NZ_SSND01000006.1 Gemmobacter aestuarii strain CC-PW-75 contig06, whole genome shotgun sequence 88,489
NZ_SSND01000007.1 Gemmobacter aestuarii strain CC-PW-75 contig07, whole genome shotgun sequence 43,923
NZ_SSND01000008.1 Gemmobacter aestuarii strain CC-PW-75 contig08, whole genome shotgun sequence 43,134
NZ_SSND01000009.1 Gemmobacter aestuarii strain CC-PW-75 contig09, whole genome shotgun sequence 5,549
NZ_SSND01000010.1 Gemmobacter aestuarii strain CC-PW-75 contig11, whole genome shotgun sequence 1,247
NZ_SSND01000011.1 Gemmobacter aestuarii strain CC-PW-75 contig12, whole genome shotgun sequence 1,003
NZ_SSND01000012.1 Gemmobacter aestuarii strain CC-PW-75 contig13, whole genome shotgun sequence 3,606

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory