fast.genomicscompare 6,575 genera of bacteria & archaea

 

Robertkochia marina CC-AMO-30D

Genome identifier: GCF_004799345.1

NCBI assembly name: ASM479934v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Robertkochia, Robertkochia marina

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Robertkochia, Robertkochia marina

Scaffolds: 12

Genes: 3,065 Protein-coding: 3,006 RNAs: 54 pseudogenes: 5

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SSMC01000001.1 Robertkochia marina strain CC-AMO-30D contig01, whole genome shotgun sequence 1,566,613
NZ_SSMC01000002.1 Robertkochia marina strain CC-AMO-30D contig02, whole genome shotgun sequence 953,059
NZ_SSMC01000003.1 Robertkochia marina strain CC-AMO-30D contig03, whole genome shotgun sequence 744,925
NZ_SSMC01000004.1 Robertkochia marina strain CC-AMO-30D contig04, whole genome shotgun sequence 289,426
NZ_SSMC01000005.1 Robertkochia marina strain CC-AMO-30D contig05, whole genome shotgun sequence 18,467
NZ_SSMC01000006.1 Robertkochia marina strain CC-AMO-30D contig07, whole genome shotgun sequence 2,541
NZ_SSMC01000007.1 Robertkochia marina strain CC-AMO-30D contig08, whole genome shotgun sequence 2,270
NZ_SSMC01000008.1 Robertkochia marina strain CC-AMO-30D contig09, whole genome shotgun sequence 1,015
NZ_SSMC01000009.1 Robertkochia marina strain CC-AMO-30D contig10, whole genome shotgun sequence 655
NZ_SSMC01000010.1 Robertkochia marina strain CC-AMO-30D contig11, whole genome shotgun sequence 595
NZ_SSMC01000011.1 Robertkochia marina strain CC-AMO-30D contig12, whole genome shotgun sequence 321
NZ_SSMC01000012.1 Robertkochia marina strain CC-AMO-30D contig13, whole genome shotgun sequence 1,652

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory