fast.genomicscompare 6,575 genera of bacteria & archaea

 

Aliishimia ponticola MYP11

Genome identifier: GCF_004803475.1

NCBI assembly name: ASM480347v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Aliishimia, Aliishimia ponticola

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Aliishimia, Aliishimia ponticola

Scaffolds: 15

Genes: 3,923 Protein-coding: 3,851 RNAs: 51 pseudogenes: 21

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SRKY01000001.1 Aliishimia ponticola strain MYP11 contig1, whole genome shotgun sequence 1,340,823
NZ_SRKY01000002.1 Aliishimia ponticola strain MYP11 contig2, whole genome shotgun sequence 987,617
NZ_SRKY01000003.1 Aliishimia ponticola strain MYP11 contig3, whole genome shotgun sequence 663,259
NZ_SRKY01000004.1 Aliishimia ponticola strain MYP11 contig4, whole genome shotgun sequence 485,111
NZ_SRKY01000005.1 Aliishimia ponticola strain MYP11 contig5, whole genome shotgun sequence 315,147
NZ_SRKY01000006.1 Aliishimia ponticola strain MYP11 contig6, whole genome shotgun sequence 152,005
NZ_SRKY01000007.1 Aliishimia ponticola strain MYP11 contig7, whole genome shotgun sequence 57,637
NZ_SRKY01000008.1 Aliishimia ponticola strain MYP11 contig8, whole genome shotgun sequence 34,397
NZ_SRKY01000009.1 Aliishimia ponticola strain MYP11 contig9, whole genome shotgun sequence 14,582
NZ_SRKY01000010.1 Aliishimia ponticola strain MYP11 contig10, whole genome shotgun sequence 9,684
NZ_SRKY01000011.1 Aliishimia ponticola strain MYP11 contig11, whole genome shotgun sequence 6,452
NZ_SRKY01000012.1 Aliishimia ponticola strain MYP11 contig12, whole genome shotgun sequence 6,353
NZ_SRKY01000013.1 Aliishimia ponticola strain MYP11 contig13, whole genome shotgun sequence 1,177
NZ_SRKY01000014.1 Aliishimia ponticola strain MYP11 contig14, whole genome shotgun sequence 1,090
NZ_SRKY01000015.1 Aliishimia ponticola strain MYP11 contig15, whole genome shotgun sequence 1,052

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory