fast.genomicscompare 6,575 genera of bacteria & archaea

 

SRXY01 sp004804335 XY-301

Genome identifier: GCF_004804335.1

NCBI assembly name: ASM480433v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, SRXY01, SRXY01 sp004804335

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Primorskyibacter

Scaffolds: 15

Genes: 4,810 Protein-coding: 4,749 RNAs: 47 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SRXY01000001.1 Pacificoceanicola onchidii strain XY-301 Scaffold1, whole genome shotgun sequence 1,069,544
NZ_SRXY01000002.1 Pacificoceanicola onchidii strain XY-301 Scaffold2, whole genome shotgun sequence 626,665
NZ_SRXY01000003.1 Pacificoceanicola onchidii strain XY-301 Scaffold3, whole genome shotgun sequence 626,197
NZ_SRXY01000004.1 Pacificoceanicola onchidii strain XY-301 Scaffold4, whole genome shotgun sequence 481,013
NZ_SRXY01000005.1 Pacificoceanicola onchidii strain XY-301 Scaffold5, whole genome shotgun sequence 429,586
NZ_SRXY01000006.1 Pacificoceanicola onchidii strain XY-301 Scaffold6, whole genome shotgun sequence 329,433
NZ_SRXY01000007.1 Pacificoceanicola onchidii strain XY-301 Scaffold7, whole genome shotgun sequence 319,652
NZ_SRXY01000008.1 Pacificoceanicola onchidii strain XY-301 Scaffold8, whole genome shotgun sequence 308,386
NZ_SRXY01000009.1 Pacificoceanicola onchidii strain XY-301 Scaffold9, whole genome shotgun sequence 218,200
NZ_SRXY01000010.1 Pacificoceanicola onchidii strain XY-301 Scaffold10, whole genome shotgun sequence 172,594
NZ_SRXY01000011.1 Pacificoceanicola onchidii strain XY-301 Scaffold11, whole genome shotgun sequence 155,000
NZ_SRXY01000012.1 Pacificoceanicola onchidii strain XY-301 Scaffold12, whole genome shotgun sequence 64,576
NZ_SRXY01000013.1 Pacificoceanicola onchidii strain XY-301 Scaffold13, whole genome shotgun sequence 63,342
NZ_SRXY01000014.1 Pacificoceanicola onchidii strain XY-301 Scaffold14, whole genome shotgun sequence 60,707
NZ_SRXY01000015.1 Pacificoceanicola onchidii strain XY-301 Scaffold15, whole genome shotgun sequence 54,884

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory