fast.genomicscompare 6,575 genera of bacteria & archaea

 

Tamlana_C onchidii XY-114

Genome identifier: GCF_004804355.1

NCBI assembly name: ASM480435v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Tamlana_C, Tamlana_C onchidii

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Algibacter, Algibacter onchidii

Scaffolds: 12

Genes: 2,989 Protein-coding: 2,934 RNAs: 47 pseudogenes: 8

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SRWZ01000001.1 Algibacter onchidii strain XY-114 NODE_1_length_808256_cov_102.776735, whole genome shotgun sequence 808,256
NZ_SRWZ01000002.1 Algibacter onchidii strain XY-114 NODE_2_length_652430_cov_99.549396, whole genome shotgun sequence 652,430
NZ_SRWZ01000003.1 Algibacter onchidii strain XY-114 NODE_3_length_532815_cov_96.752244, whole genome shotgun sequence 532,815
NZ_SRWZ01000004.1 Algibacter onchidii strain XY-114 NODE_4_length_366664_cov_105.424837, whole genome shotgun sequence 366,664
NZ_SRWZ01000005.1 Algibacter onchidii strain XY-114 NODE_5_length_281219_cov_102.194783, whole genome shotgun sequence 281,219
NZ_SRWZ01000006.1 Algibacter onchidii strain XY-114 NODE_6_length_267382_cov_106.318307, whole genome shotgun sequence 267,382
NZ_SRWZ01000007.1 Algibacter onchidii strain XY-114 NODE_7_length_265092_cov_105.624374, whole genome shotgun sequence 265,092
NZ_SRWZ01000008.1 Algibacter onchidii strain XY-114 NODE_8_length_177545_cov_99.513628, whole genome shotgun sequence 177,545
NZ_SRWZ01000009.1 Algibacter onchidii strain XY-114 NODE_9_length_57317_cov_103.357752, whole genome shotgun sequence 57,317
NZ_SRWZ01000010.1 Algibacter onchidii strain XY-114 NODE_10_length_5740_cov_205.154476, whole genome shotgun sequence 5,740
NZ_SRWZ01000011.1 Algibacter onchidii strain XY-114 NODE_11_length_1229_cov_313.267148, whole genome shotgun sequence 1,229
NZ_SRWZ01000012.1 Algibacter onchidii strain XY-114 NODE_12_length_1148_cov_309.502434, whole genome shotgun sequence 1,148

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory