fast.genomicscompare 6,575 genera of bacteria & archaea

 

Allorhizobium ipomoeae shin9-1

Genome identifier: GCF_004912165.1

NCBI assembly name: ASM491216v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Allorhizobium, Allorhizobium ipomoeae

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhizobiaceae, Peteryoungia, Peteryoungia ipomoeae

Scaffolds: 23

Genes: 4,212 Protein-coding: 4,128 RNAs: 53 pseudogenes: 31

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_STGV01000001.1 Peteryoungia ipomoeae strain shin9-1 1, whole genome shotgun sequence 1,338,591
NZ_STGV01000002.1 Peteryoungia ipomoeae strain shin9-1 2, whole genome shotgun sequence 648,833
NZ_STGV01000003.1 Peteryoungia ipomoeae strain shin9-1 3, whole genome shotgun sequence 545,072
NZ_STGV01000004.1 Peteryoungia ipomoeae strain shin9-1 4, whole genome shotgun sequence 500,847
NZ_STGV01000005.1 Peteryoungia ipomoeae strain shin9-1 5, whole genome shotgun sequence 405,279
NZ_STGV01000006.1 Peteryoungia ipomoeae strain shin9-1 6, whole genome shotgun sequence 306,445
NZ_STGV01000007.1 Peteryoungia ipomoeae strain shin9-1 7, whole genome shotgun sequence 256,943
NZ_STGV01000008.1 Peteryoungia ipomoeae strain shin9-1 8, whole genome shotgun sequence 160,305
NZ_STGV01000009.1 Peteryoungia ipomoeae strain shin9-1 9, whole genome shotgun sequence 68,527
NZ_STGV01000010.1 Peteryoungia ipomoeae strain shin9-1 10, whole genome shotgun sequence 43,471
NZ_STGV01000011.1 Peteryoungia ipomoeae strain shin9-1 11, whole genome shotgun sequence 37,500
NZ_STGV01000012.1 Peteryoungia ipomoeae strain shin9-1 12, whole genome shotgun sequence 27,843
NZ_STGV01000013.1 Peteryoungia ipomoeae strain shin9-1 13, whole genome shotgun sequence 13,967
NZ_STGV01000014.1 Peteryoungia ipomoeae strain shin9-1 14, whole genome shotgun sequence 13,891
NZ_STGV01000015.1 Peteryoungia ipomoeae strain shin9-1 15, whole genome shotgun sequence 6,459
NZ_STGV01000016.1 Peteryoungia ipomoeae strain shin9-1 17, whole genome shotgun sequence 3,821
NZ_STGV01000017.1 Peteryoungia ipomoeae strain shin9-1 18, whole genome shotgun sequence 3,268
NZ_STGV01000018.1 Peteryoungia ipomoeae strain shin9-1 19, whole genome shotgun sequence 1,574
NZ_STGV01000019.1 Peteryoungia ipomoeae strain shin9-1 20, whole genome shotgun sequence 713
NZ_STGV01000020.1 Peteryoungia ipomoeae strain shin9-1 21, whole genome shotgun sequence 580
NZ_STGV01000021.1 Peteryoungia ipomoeae strain shin9-1 22, whole genome shotgun sequence 535
NZ_STGV01000022.1 Peteryoungia ipomoeae strain shin9-1 23, whole genome shotgun sequence 535
NZ_STGV01000023.1 Peteryoungia ipomoeae strain shin9-1 24, whole genome shotgun sequence 530

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory