fast.genomicscompare 6,575 genera of bacteria & archaea

 

Hoeflea_A sp004959855 XY-223

Genome identifier: GCF_004959855.1

NCBI assembly name: ASM495985v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, Hoeflea_A, Hoeflea_A sp004959855

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Nitratireductor

Scaffolds: 59

Genes: 5,840 Protein-coding: 5,710 RNAs: 53 pseudogenes: 77

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SPNT01000001.1 Nitratireductor sp. XY-223 NODE_1_length_1418466_cov_52.905788, whole genome shotgun sequence 1,418,466
NZ_SPNT01000002.1 Nitratireductor sp. XY-223 NODE_2_length_1058888_cov_69.650639, whole genome shotgun sequence 1,058,888
NZ_SPNT01000003.1 Nitratireductor sp. XY-223 NODE_3_length_739462_cov_50.756245, whole genome shotgun sequence 739,462
NZ_SPNT01000004.1 Nitratireductor sp. XY-223 NODE_4_length_447616_cov_59.174286, whole genome shotgun sequence 447,616
NZ_SPNT01000005.1 Nitratireductor sp. XY-223 NODE_5_length_409048_cov_63.369440, whole genome shotgun sequence 409,048
NZ_SPNT01000006.1 Nitratireductor sp. XY-223 NODE_6_length_335010_cov_58.157321, whole genome shotgun sequence 335,010
NZ_SPNT01000007.1 Nitratireductor sp. XY-223 NODE_7_length_280012_cov_55.888028, whole genome shotgun sequence 280,012
NZ_SPNT01000008.1 Nitratireductor sp. XY-223 NODE_8_length_215228_cov_54.630933, whole genome shotgun sequence 215,228
NZ_SPNT01000009.1 Nitratireductor sp. XY-223 NODE_9_length_208495_cov_59.588365, whole genome shotgun sequence 208,495
NZ_SPNT01000010.1 Nitratireductor sp. XY-223 NODE_10_length_98433_cov_55.497376, whole genome shotgun sequence 98,433
NZ_SPNT01000011.1 Nitratireductor sp. XY-223 NODE_11_length_84833_cov_47.740285, whole genome shotgun sequence 84,833
NZ_SPNT01000012.1 Nitratireductor sp. XY-223 NODE_12_length_78545_cov_64.146269, whole genome shotgun sequence 78,545
NZ_SPNT01000013.1 Nitratireductor sp. XY-223 NODE_13_length_77997_cov_62.090297, whole genome shotgun sequence 77,997
NZ_SPNT01000014.1 Nitratireductor sp. XY-223 NODE_14_length_55819_cov_63.872688, whole genome shotgun sequence 55,819
NZ_SPNT01000015.1 Nitratireductor sp. XY-223 NODE_15_length_54531_cov_60.886859, whole genome shotgun sequence 54,531
NZ_SPNT01000016.1 Nitratireductor sp. XY-223 NODE_16_length_52968_cov_62.313130, whole genome shotgun sequence 52,968
NZ_SPNT01000017.1 Nitratireductor sp. XY-223 NODE_17_length_49324_cov_63.428470, whole genome shotgun sequence 49,324
NZ_SPNT01000018.1 Nitratireductor sp. XY-223 NODE_18_length_47227_cov_51.448818, whole genome shotgun sequence 47,227
NZ_SPNT01000019.1 Nitratireductor sp. XY-223 NODE_19_length_40894_cov_54.424644, whole genome shotgun sequence 40,894
NZ_SPNT01000020.1 Nitratireductor sp. XY-223 NODE_20_length_37828_cov_68.627629, whole genome shotgun sequence 37,828
NZ_SPNT01000021.1 Nitratireductor sp. XY-223 NODE_21_length_35284_cov_54.364389, whole genome shotgun sequence 35,284
NZ_SPNT01000022.1 Nitratireductor sp. XY-223 NODE_22_length_33397_cov_55.995072, whole genome shotgun sequence 33,397
NZ_SPNT01000023.1 Nitratireductor sp. XY-223 NODE_23_length_32865_cov_54.562851, whole genome shotgun sequence 32,865
NZ_SPNT01000024.1 Nitratireductor sp. XY-223 NODE_24_length_31916_cov_62.464570, whole genome shotgun sequence 31,916
NZ_SPNT01000025.1 Nitratireductor sp. XY-223 NODE_25_length_30384_cov_56.612662, whole genome shotgun sequence 30,384
NZ_SPNT01000026.1 Nitratireductor sp. XY-223 NODE_26_length_21540_cov_48.999440, whole genome shotgun sequence 21,540
NZ_SPNT01000027.1 Nitratireductor sp. XY-223 NODE_27_length_20416_cov_60.919389, whole genome shotgun sequence 20,416
NZ_SPNT01000028.1 Nitratireductor sp. XY-223 NODE_28_length_19288_cov_57.243074, whole genome shotgun sequence 19,288
NZ_SPNT01000029.1 Nitratireductor sp. XY-223 NODE_29_length_17288_cov_54.647638, whole genome shotgun sequence 17,288
NZ_SPNT01000030.1 Nitratireductor sp. XY-223 NODE_30_length_17266_cov_47.507320, whole genome shotgun sequence 17,266
NZ_SPNT01000031.1 Nitratireductor sp. XY-223 NODE_31_length_11487_cov_34.789724, whole genome shotgun sequence 11,487
NZ_SPNT01000032.1 Nitratireductor sp. XY-223 NODE_32_length_11021_cov_51.960275, whole genome shotgun sequence 11,021
NZ_SPNT01000033.1 Nitratireductor sp. XY-223 NODE_33_length_10646_cov_112.175487, whole genome shotgun sequence 10,646
NZ_SPNT01000034.1 Nitratireductor sp. XY-223 NODE_34_length_10368_cov_48.065190, whole genome shotgun sequence 10,368
NZ_SPNT01000035.1 Nitratireductor sp. XY-223 NODE_35_length_8856_cov_59.340584, whole genome shotgun sequence 8,856
NZ_SPNT01000036.1 Nitratireductor sp. XY-223 NODE_36_length_7378_cov_55.040926, whole genome shotgun sequence 7,378
NZ_SPNT01000037.1 Nitratireductor sp. XY-223 NODE_37_length_7034_cov_113.706929, whole genome shotgun sequence 7,034
NZ_SPNT01000038.1 Nitratireductor sp. XY-223 NODE_38_length_6763_cov_56.598615, whole genome shotgun sequence 6,763
NZ_SPNT01000039.1 Nitratireductor sp. XY-223 NODE_39_length_6685_cov_67.291895, whole genome shotgun sequence 6,685
NZ_SPNT01000040.1 Nitratireductor sp. XY-223 NODE_40_length_6466_cov_196.391962, whole genome shotgun sequence 6,466
NZ_SPNT01000041.1 Nitratireductor sp. XY-223 NODE_41_length_6107_cov_59.949883, whole genome shotgun sequence 6,107
NZ_SPNT01000042.1 Nitratireductor sp. XY-223 NODE_42_length_5865_cov_39.320334, whole genome shotgun sequence 5,865
NZ_SPNT01000043.1 Nitratireductor sp. XY-223 NODE_43_length_4302_cov_75.364506, whole genome shotgun sequence 4,302
NZ_SPNT01000044.1 Nitratireductor sp. XY-223 NODE_44_length_3834_cov_73.995960, whole genome shotgun sequence 3,834
NZ_SPNT01000045.1 Nitratireductor sp. XY-223 NODE_45_length_3769_cov_57.512884, whole genome shotgun sequence 3,769
NZ_SPNT01000046.1 Nitratireductor sp. XY-223 NODE_46_length_3598_cov_116.604544, whole genome shotgun sequence 3,598
NZ_SPNT01000047.1 Nitratireductor sp. XY-223 NODE_47_length_3392_cov_63.548534, whole genome shotgun sequence 3,392
NZ_SPNT01000048.1 Nitratireductor sp. XY-223 NODE_48_length_2995_cov_57.799235, whole genome shotgun sequence 2,995
NZ_SPNT01000049.1 Nitratireductor sp. XY-223 NODE_49_length_2866_cov_45.221494, whole genome shotgun sequence 2,866
NZ_SPNT01000050.1 Nitratireductor sp. XY-223 NODE_50_length_2540_cov_49.026044, whole genome shotgun sequence 2,540
NZ_SPNT01000051.1 Nitratireductor sp. XY-223 NODE_51_length_2376_cov_140.074945, whole genome shotgun sequence 2,376
NZ_SPNT01000052.1 Nitratireductor sp. XY-223 NODE_52_length_2112_cov_63.045203, whole genome shotgun sequence 2,112
NZ_SPNT01000053.1 Nitratireductor sp. XY-223 NODE_53_length_1816_cov_143.280826, whole genome shotgun sequence 1,816
NZ_SPNT01000054.1 Nitratireductor sp. XY-223 NODE_54_length_1766_cov_54.517325, whole genome shotgun sequence 1,766
NZ_SPNT01000055.1 Nitratireductor sp. XY-223 NODE_55_length_1371_cov_62.403200, whole genome shotgun sequence 1,371
NZ_SPNT01000056.1 Nitratireductor sp. XY-223 NODE_56_length_1297_cov_228.041667, whole genome shotgun sequence 1,297
NZ_SPNT01000057.1 Nitratireductor sp. XY-223 NODE_57_length_1109_cov_152.097166, whole genome shotgun sequence 1,109
NZ_SPNT01000058.1 Nitratireductor sp. XY-223 NODE_58_length_1103_cov_145.911405, whole genome shotgun sequence 1,103
NZ_SPNT01000059.1 Nitratireductor sp. XY-223 NODE_59_length_1003_cov_131.500000, whole genome shotgun sequence 1,003

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory