fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pontimicrobium aquaticum CAU 1491

Genome identifier: GCF_005047595.1

NCBI assembly name: ASM504759v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Pontimicrobium, Pontimicrobium aquaticum

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Pontimicrobium, Pontimicrobium aquaticum

Scaffolds: 22

Genes: 3,078 Protein-coding: 3,019 RNAs: 45 pseudogenes: 14

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SUPL01000001.1 Pontimicrobium aquaticum strain CAU 1491 contig1, whole genome shotgun sequence 649,653
NZ_SUPL01000002.1 Pontimicrobium aquaticum strain CAU 1491 contig2, whole genome shotgun sequence 586,524
NZ_SUPL01000003.1 Pontimicrobium aquaticum strain CAU 1491 contig3, whole genome shotgun sequence 443,131
NZ_SUPL01000004.1 Pontimicrobium aquaticum strain CAU 1491 contig4, whole genome shotgun sequence 402,144
NZ_SUPL01000005.1 Pontimicrobium aquaticum strain CAU 1491 contig5, whole genome shotgun sequence 307,261
NZ_SUPL01000006.1 Pontimicrobium aquaticum strain CAU 1491 contig6, whole genome shotgun sequence 303,652
NZ_SUPL01000007.1 Pontimicrobium aquaticum strain CAU 1491 contig7, whole genome shotgun sequence 177,430
NZ_SUPL01000008.1 Pontimicrobium aquaticum strain CAU 1491 contig8, whole genome shotgun sequence 152,853
NZ_SUPL01000009.1 Pontimicrobium aquaticum strain CAU 1491 contig9, whole genome shotgun sequence 80,579
NZ_SUPL01000010.1 Pontimicrobium aquaticum strain CAU 1491 contig10, whole genome shotgun sequence 63,586
NZ_SUPL01000011.1 Pontimicrobium aquaticum strain CAU 1491 contig11, whole genome shotgun sequence 47,474
NZ_SUPL01000012.1 Pontimicrobium aquaticum strain CAU 1491 contig12, whole genome shotgun sequence 29,272
NZ_SUPL01000013.1 Pontimicrobium aquaticum strain CAU 1491 contig13, whole genome shotgun sequence 23,622
NZ_SUPL01000014.1 Pontimicrobium aquaticum strain CAU 1491 contig14, whole genome shotgun sequence 12,409
NZ_SUPL01000015.1 Pontimicrobium aquaticum strain CAU 1491 contig15, whole genome shotgun sequence 11,202
NZ_SUPL01000016.1 Pontimicrobium aquaticum strain CAU 1491 contig16, whole genome shotgun sequence 5,696
NZ_SUPL01000017.1 Pontimicrobium aquaticum strain CAU 1491 contig17, whole genome shotgun sequence 4,999
NZ_SUPL01000018.1 Pontimicrobium aquaticum strain CAU 1491 contig18, whole genome shotgun sequence 4,842
NZ_SUPL01000019.1 Pontimicrobium aquaticum strain CAU 1491 contig19, whole genome shotgun sequence 2,337
NZ_SUPL01000020.1 Pontimicrobium aquaticum strain CAU 1491 contig20, whole genome shotgun sequence 1,935
NZ_SUPL01000021.1 Pontimicrobium aquaticum strain CAU 1491 contig21, whole genome shotgun sequence 1,698
NZ_SUPL01000022.1 Pontimicrobium aquaticum strain CAU 1491 contig22, whole genome shotgun sequence 1,315

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory