fast.genomicscompare 6,575 genera of bacteria & archaea

 

Lichenicoccus roseus KEBCLARHB70R

Genome identifier: GCF_005844085.1

NCBI assembly name: ASM584408v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Acetobacterales, Acetobacteraceae, Lichenicoccus, Lichenicoccus roseus

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodospirillales, Acetobacteraceae, Lichenicoccus, Lichenicoccus roseus

Scaffolds: 26

Genes: 4,427 Protein-coding: 4,313 RNAs: 53 pseudogenes: 61

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VCDI01000001.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_1, whole genome shotgun sequence 1,180,588
NZ_VCDI01000002.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_2, whole genome shotgun sequence 856,276
NZ_VCDI01000003.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_3, whole genome shotgun sequence 700,473
NZ_VCDI01000004.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_4, whole genome shotgun sequence 384,057
NZ_VCDI01000005.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_5, whole genome shotgun sequence 378,488
NZ_VCDI01000006.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_6, whole genome shotgun sequence 259,376
NZ_VCDI01000007.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_7, whole genome shotgun sequence 186,003
NZ_VCDI01000008.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_8, whole genome shotgun sequence 171,697
NZ_VCDI01000009.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_9, whole genome shotgun sequence 165,285
NZ_VCDI01000010.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_10, whole genome shotgun sequence 141,827
NZ_VCDI01000011.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_11, whole genome shotgun sequence 98,904
NZ_VCDI01000012.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_12, whole genome shotgun sequence 86,449
NZ_VCDI01000013.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_13, whole genome shotgun sequence 30,924
NZ_VCDI01000014.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_14, whole genome shotgun sequence 30,590
NZ_VCDI01000015.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_15, whole genome shotgun sequence 30,278
NZ_VCDI01000016.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_16, whole genome shotgun sequence 27,260
NZ_VCDI01000017.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_17, whole genome shotgun sequence 22,923
NZ_VCDI01000018.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_18, whole genome shotgun sequence 7,804
NZ_VCDI01000019.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_19, whole genome shotgun sequence 7,405
NZ_VCDI01000020.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_20, whole genome shotgun sequence 7,318
NZ_VCDI01000021.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_21, whole genome shotgun sequence 5,558
NZ_VCDI01000022.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_22, whole genome shotgun sequence 4,508
NZ_VCDI01000023.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_23, whole genome shotgun sequence 1,438
NZ_VCDI01000024.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_24, whole genome shotgun sequence 1,059
NZ_VCDI01000025.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_25, whole genome shotgun sequence 1,058
NZ_VCDI01000026.1 Lichenicoccus roseus strain KEBCLARHB70R NODE_26, whole genome shotgun sequence 562

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory