fast.genomicscompare 6,575 genera of bacteria & archaea

 

Xanthobacter autotrophicus_A DSM 432

Genome identifier: GCF_005871085.1

NCBI assembly name: ASM587108v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Xanthobacteraceae, Xanthobacter, Xanthobacter autotrophicus_A

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Xanthobacteraceae, Xanthobacter, Xanthobacter autotrophicus

Scaffolds: 42

Genes: 4,539 Protein-coding: 4,411 RNAs: 54 pseudogenes: 74

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VAUP01000001.1 Xanthobacter autotrophicus strain DSM 432 NODE_1092, whole genome shotgun sequence 623
NZ_VAUP01000002.1 Xanthobacter autotrophicus strain DSM 432 NODE_10, whole genome shotgun sequence 214,017
NZ_VAUP01000003.1 Xanthobacter autotrophicus strain DSM 432 NODE_1124, whole genome shotgun sequence 618
NZ_VAUP01000004.1 Xanthobacter autotrophicus strain DSM 432 NODE_11, whole genome shotgun sequence 198,120
NZ_VAUP01000005.1 Xanthobacter autotrophicus strain DSM 432 NODE_12, whole genome shotgun sequence 139,224
NZ_VAUP01000006.1 Xanthobacter autotrophicus strain DSM 432 NODE_138, whole genome shotgun sequence 1,166
NZ_VAUP01000007.1 Xanthobacter autotrophicus strain DSM 432 NODE_13, whole genome shotgun sequence 120,834
NZ_VAUP01000008.1 Xanthobacter autotrophicus strain DSM 432 NODE_144, whole genome shotgun sequence 1,157
NZ_VAUP01000009.1 Xanthobacter autotrophicus strain DSM 432 NODE_14, whole genome shotgun sequence 114,038
NZ_VAUP01000010.1 Xanthobacter autotrophicus strain DSM 432 NODE_15, whole genome shotgun sequence 72,728
NZ_VAUP01000011.1 Xanthobacter autotrophicus strain DSM 432 NODE_16, whole genome shotgun sequence 62,610
NZ_VAUP01000012.1 Xanthobacter autotrophicus strain DSM 432 NODE_17, whole genome shotgun sequence 49,170
NZ_VAUP01000013.1 Xanthobacter autotrophicus strain DSM 432 NODE_18, whole genome shotgun sequence 39,812
NZ_VAUP01000014.1 Xanthobacter autotrophicus strain DSM 432 NODE_19, whole genome shotgun sequence 39,428
NZ_VAUP01000015.1 Xanthobacter autotrophicus strain DSM 432 NODE_1, whole genome shotgun sequence 774,583
NZ_VAUP01000016.1 Xanthobacter autotrophicus strain DSM 432 NODE_20, whole genome shotgun sequence 39,075
NZ_VAUP01000017.1 Xanthobacter autotrophicus strain DSM 432 NODE_21, whole genome shotgun sequence 24,706
NZ_VAUP01000018.1 Xanthobacter autotrophicus strain DSM 432 NODE_22, whole genome shotgun sequence 23,106
NZ_VAUP01000019.1 Xanthobacter autotrophicus strain DSM 432 NODE_236, whole genome shotgun sequence 1,010
NZ_VAUP01000020.1 Xanthobacter autotrophicus strain DSM 432 NODE_25, whole genome shotgun sequence 13,265
NZ_VAUP01000021.1 Xanthobacter autotrophicus strain DSM 432 NODE_26, whole genome shotgun sequence 12,146
NZ_VAUP01000022.1 Xanthobacter autotrophicus strain DSM 432 NODE_2, whole genome shotgun sequence 664,363
NZ_VAUP01000023.1 Xanthobacter autotrophicus strain DSM 432 NODE_30, whole genome shotgun sequence 5,128
NZ_VAUP01000024.1 Xanthobacter autotrophicus strain DSM 432 NODE_31, whole genome shotgun sequence 4,488
NZ_VAUP01000025.1 Xanthobacter autotrophicus strain DSM 432 NODE_353, whole genome shotgun sequence 899
NZ_VAUP01000026.1 Xanthobacter autotrophicus strain DSM 432 NODE_37, whole genome shotgun sequence 3,369
NZ_VAUP01000027.1 Xanthobacter autotrophicus strain DSM 432 NODE_39, whole genome shotgun sequence 3,053
NZ_VAUP01000028.1 Xanthobacter autotrophicus strain DSM 432 NODE_3, whole genome shotgun sequence 491,724
NZ_VAUP01000029.1 Xanthobacter autotrophicus strain DSM 432 NODE_451, whole genome shotgun sequence 840
NZ_VAUP01000030.1 Xanthobacter autotrophicus strain DSM 432 NODE_497, whole genome shotgun sequence 816
NZ_VAUP01000031.1 Xanthobacter autotrophicus strain DSM 432 NODE_4, whole genome shotgun sequence 423,418
NZ_VAUP01000032.1 Xanthobacter autotrophicus strain DSM 432 NODE_530, whole genome shotgun sequence 798
NZ_VAUP01000033.1 Xanthobacter autotrophicus strain DSM 432 NODE_54, whole genome shotgun sequence 1,868
NZ_VAUP01000034.1 Xanthobacter autotrophicus strain DSM 432 NODE_57, whole genome shotgun sequence 1,772
NZ_VAUP01000035.1 Xanthobacter autotrophicus strain DSM 432 NODE_5, whole genome shotgun sequence 381,522
NZ_VAUP01000036.1 Xanthobacter autotrophicus strain DSM 432 NODE_60, whole genome shotgun sequence 1,698
NZ_VAUP01000037.1 Xanthobacter autotrophicus strain DSM 432 NODE_6, whole genome shotgun sequence 346,104
NZ_VAUP01000038.1 Xanthobacter autotrophicus strain DSM 432 NODE_7, whole genome shotgun sequence 265,318
NZ_VAUP01000039.1 Xanthobacter autotrophicus strain DSM 432 NODE_82, whole genome shotgun sequence 1,418
NZ_VAUP01000040.1 Xanthobacter autotrophicus strain DSM 432 NODE_852, whole genome shotgun sequence 682
NZ_VAUP01000041.1 Xanthobacter autotrophicus strain DSM 432 NODE_8, whole genome shotgun sequence 247,924
NZ_VAUP01000042.1 Xanthobacter autotrophicus strain DSM 432 NODE_9, whole genome shotgun sequence 224,649

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory