fast.genomicscompare 6,575 genera of bacteria & archaea

 

Paroceanicella profunda D4M1

Genome identifier: GCF_005887635.2

NCBI assembly name: ASM588763v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Paroceanicella, Paroceanicella profunda

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Paroceanicella, Paroceanicella profunda

Scaffolds: 7

Genes: 4,850 Protein-coding: 4,721 RNAs: 69 pseudogenes: 60

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_CP040818.1 Paroceanicella profunda strain D4M1 chromosome, complete genome 4,039,866
NZ_CP040819.1 Paroceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 586,520
NZ_CP040820.1 Paroceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence 288,677
NZ_CP040821.1 Paroceanicella profunda strain D4M1 plasmid pD4M1C, complete sequence 189,758
NZ_CP040822.1 Paroceanicella profunda strain D4M1 plasmid pD4M1D, complete sequence 137,471
NZ_CP040823.1 Paroceanicella profunda strain D4M1 plasmid pD4M1E, complete sequence 114,056
NZ_CP040824.1 Paroceanicella profunda strain D4M1 plasmid pD4M1F, complete sequence 112,235

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory