fast.genomicscompare 6,575 genera of bacteria & archaea

 

Methylotetracoccus oryzae C50C1

Genome identifier: GCF_006175985.1

NCBI assembly name: ASM617598v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Methylococcales, Methylococcaceae, Methylotetracoccus, Methylotetracoccus oryzae

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Methylococcales, Methylococcaceae, Methylotetracoccus, Methylotetracoccus oryzae

Scaffolds: 42

Genes: 4,147 Protein-coding: 4,067 RNAs: 53 pseudogenes: 27

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_SRSH01000001.1 Methylotetracoccus oryzae strain C50C1 NODE_1_length_592852_cov_260.381056, whole genome shotgun sequence 592,852
NZ_SRSH01000002.1 Methylotetracoccus oryzae strain C50C1 NODE_2_length_292154_cov_244.014786, whole genome shotgun sequence 292,154
NZ_SRSH01000003.1 Methylotetracoccus oryzae strain C50C1 NODE_3_length_278351_cov_260.878923, whole genome shotgun sequence 278,351
NZ_SRSH01000004.1 Methylotetracoccus oryzae strain C50C1 NODE_4_length_277318_cov_273.788095, whole genome shotgun sequence 277,318
NZ_SRSH01000005.1 Methylotetracoccus oryzae strain C50C1 NODE_5_length_235968_cov_247.648171, whole genome shotgun sequence 235,968
NZ_SRSH01000006.1 Methylotetracoccus oryzae strain C50C1 NODE_6_length_234879_cov_266.654859, whole genome shotgun sequence 234,879
NZ_SRSH01000007.1 Methylotetracoccus oryzae strain C50C1 NODE_7_length_223077_cov_244.792379, whole genome shotgun sequence 223,077
NZ_SRSH01000008.1 Methylotetracoccus oryzae strain C50C1 NODE_8_length_214892_cov_244.690789, whole genome shotgun sequence 214,892
NZ_SRSH01000009.1 Methylotetracoccus oryzae strain C50C1 NODE_9_length_199476_cov_264.463213, whole genome shotgun sequence 199,476
NZ_SRSH01000010.1 Methylotetracoccus oryzae strain C50C1 NODE_10_length_183872_cov_297.782279, whole genome shotgun sequence 183,872
NZ_SRSH01000011.1 Methylotetracoccus oryzae strain C50C1 NODE_11_length_178791_cov_262.414355, whole genome shotgun sequence 178,791
NZ_SRSH01000012.1 Methylotetracoccus oryzae strain C50C1 NODE_12_length_172117_cov_265.625493, whole genome shotgun sequence 172,117
NZ_SRSH01000013.1 Methylotetracoccus oryzae strain C50C1 NODE_13_length_149621_cov_268.098128, whole genome shotgun sequence 149,621
NZ_SRSH01000014.1 Methylotetracoccus oryzae strain C50C1 NODE_14_length_147592_cov_260.644719, whole genome shotgun sequence 147,592
NZ_SRSH01000015.1 Methylotetracoccus oryzae strain C50C1 NODE_15_length_144725_cov_264.905313, whole genome shotgun sequence 144,725
NZ_SRSH01000016.1 Methylotetracoccus oryzae strain C50C1 NODE_16_length_142318_cov_270.072218, whole genome shotgun sequence 142,318
NZ_SRSH01000017.1 Methylotetracoccus oryzae strain C50C1 NODE_17_length_110019_cov_276.349057, whole genome shotgun sequence 110,019
NZ_SRSH01000018.1 Methylotetracoccus oryzae strain C50C1 NODE_18_length_106317_cov_269.373872, whole genome shotgun sequence 106,317
NZ_SRSH01000019.1 Methylotetracoccus oryzae strain C50C1 NODE_19_length_106085_cov_272.067364, whole genome shotgun sequence 106,085
NZ_SRSH01000020.1 Methylotetracoccus oryzae strain C50C1 NODE_20_length_96763_cov_255.202595, whole genome shotgun sequence 96,763
NZ_SRSH01000021.1 Methylotetracoccus oryzae strain C50C1 NODE_21_length_91696_cov_279.211842, whole genome shotgun sequence 91,696
NZ_SRSH01000022.1 Methylotetracoccus oryzae strain C50C1 NODE_22_length_83550_cov_261.764009, whole genome shotgun sequence 83,550
NZ_SRSH01000023.1 Methylotetracoccus oryzae strain C50C1 NODE_23_length_72979_cov_262.467305, whole genome shotgun sequence 72,979
NZ_SRSH01000024.1 Methylotetracoccus oryzae strain C50C1 NODE_24_length_67518_cov_277.944017, whole genome shotgun sequence 67,518
NZ_SRSH01000025.1 Methylotetracoccus oryzae strain C50C1 NODE_25_length_64544_cov_278.521445, whole genome shotgun sequence 64,544
NZ_SRSH01000026.1 Methylotetracoccus oryzae strain C50C1 NODE_26_length_60372_cov_259.102906, whole genome shotgun sequence 60,372
NZ_SRSH01000027.1 Methylotetracoccus oryzae strain C50C1 NODE_27_length_59197_cov_284.849562, whole genome shotgun sequence 59,197
NZ_SRSH01000028.1 Methylotetracoccus oryzae strain C50C1 NODE_28_length_56602_cov_264.739425, whole genome shotgun sequence 56,602
NZ_SRSH01000029.1 Methylotetracoccus oryzae strain C50C1 NODE_29_length_48247_cov_300.742997, whole genome shotgun sequence 48,247
NZ_SRSH01000030.1 Methylotetracoccus oryzae strain C50C1 NODE_30_length_45987_cov_253.566763, whole genome shotgun sequence 45,987
NZ_SRSH01000031.1 Methylotetracoccus oryzae strain C50C1 NODE_32_length_18498_cov_306.872925, whole genome shotgun sequence 18,498
NZ_SRSH01000032.1 Methylotetracoccus oryzae strain C50C1 NODE_33_length_17902_cov_258.194837, whole genome shotgun sequence 17,902
NZ_SRSH01000033.1 Methylotetracoccus oryzae strain C50C1 NODE_34_length_14646_cov_301.142739, whole genome shotgun sequence 14,646
NZ_SRSH01000034.1 Methylotetracoccus oryzae strain C50C1 NODE_35_length_11719_cov_281.107968, whole genome shotgun sequence 11,719
NZ_SRSH01000035.1 Methylotetracoccus oryzae strain C50C1 NODE_37_length_10733_cov_278.202168, whole genome shotgun sequence 10,733
NZ_SRSH01000036.1 Methylotetracoccus oryzae strain C50C1 NODE_42_length_8631_cov_321.366831, whole genome shotgun sequence 8,631
NZ_SRSH01000037.1 Methylotetracoccus oryzae strain C50C1 NODE_54_length_6570_cov_279.912983, whole genome shotgun sequence 6,570
NZ_SRSH01000038.1 Methylotetracoccus oryzae strain C50C1 NODE_132_length_3881_cov_303.727515, whole genome shotgun sequence 3,881
NZ_SRSH01000039.1 Methylotetracoccus oryzae strain C50C1 NODE_147_length_3716_cov_294.750070, whole genome shotgun sequence 3,716
NZ_SRSH01000040.1 Methylotetracoccus oryzae strain C50C1 NODE_334_length_2501_cov_275.250210, whole genome shotgun sequence 2,501
NZ_SRSH01000041.1 Methylotetracoccus oryzae strain C50C1 NODE_595_length_1668_cov_1162.148867, whole genome shotgun sequence 1,668
NZ_SRSH01000042.1 Methylotetracoccus oryzae strain C50C1 NODE_849_length_1261_cov_2455.811951, whole genome shotgun sequence 1,261

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory