fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudomonas_S boreopolis HP2

Genome identifier: GCF_006386585.1

NCBI assembly name: ASM638658v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Xanthomonadales, Xanthomonadaceae, Pseudomonas_S, Pseudomonas_S boreopolis

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudomonadaceae, Pseudomonas

Scaffolds: 14

Genes: 4,002 Protein-coding: 3,905 RNAs: 61 pseudogenes: 36

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VAHJ01000001.1 Pseudomonas sp. Hp2 Scaffold1_1, whole genome shotgun sequence 1,203,117
NZ_VAHJ01000002.1 Pseudomonas sp. Hp2 Scaffold2_1, whole genome shotgun sequence 924,611
NZ_VAHJ01000003.1 Pseudomonas sp. Hp2 Scaffold3_1, whole genome shotgun sequence 823,734
NZ_VAHJ01000004.1 Pseudomonas sp. Hp2 Scaffold4_1, whole genome shotgun sequence 429,605
NZ_VAHJ01000005.1 Pseudomonas sp. Hp2 Scaffold5_1, whole genome shotgun sequence 306,257
NZ_VAHJ01000006.1 Pseudomonas sp. Hp2 Scaffold6_1, whole genome shotgun sequence 256,718
NZ_VAHJ01000007.1 Pseudomonas sp. Hp2 Scaffold7_1, whole genome shotgun sequence 187,143
NZ_VAHJ01000008.1 Pseudomonas sp. Hp2 Scaffold8_1, whole genome shotgun sequence 183,660
NZ_VAHJ01000009.1 Pseudomonas sp. Hp2 Scaffold9_1, whole genome shotgun sequence 135,655
NZ_VAHJ01000010.1 Pseudomonas sp. Hp2 Scaffold10_1, whole genome shotgun sequence 62,424
NZ_VAHJ01000011.1 Pseudomonas sp. Hp2 Scaffold11_1, whole genome shotgun sequence 41,861
NZ_VAHJ01000012.1 Pseudomonas sp. Hp2 Scaffold12_1, whole genome shotgun sequence 5,765
NZ_VAHJ01000013.1 Pseudomonas sp. Hp2 Scaffold13_1, whole genome shotgun sequence 2,571
NZ_VAHJ01000014.1 Pseudomonas sp. Hp2 Scaffold14_1, whole genome shotgun sequence 1,261

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory