fast.genomicscompare 6,575 genera of bacteria & archaea

 

Paucihalobacter ruber CWB-1

Genome identifier: GCF_006494535.1

NCBI assembly name: ASM649453v1

GTDB taxonomy: Bacteria, Bacteroidota, Bacteroidia, Flavobacteriales, Flavobacteriaceae, Paucihalobacter, Paucihalobacter ruber

NCBI taxonomy: Bacteria, Bacteroidota, Flavobacteriia, Flavobacteriales, Flavobacteriaceae, Paucihalobacter, Paucihalobacter ruber

Scaffolds: 20

Genes: 3,141 Protein-coding: 3,089 RNAs: 46 pseudogenes: 6

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VHIQ01000001.1 Paucihalobacter ruber strain CWB-1 Scaffold1, whole genome shotgun sequence 803,566
NZ_VHIQ01000002.1 Paucihalobacter ruber strain CWB-1 Scaffold2, whole genome shotgun sequence 588,507
NZ_VHIQ01000003.1 Paucihalobacter ruber strain CWB-1 Scaffold3, whole genome shotgun sequence 543,062
NZ_VHIQ01000004.1 Paucihalobacter ruber strain CWB-1 Scaffold4, whole genome shotgun sequence 446,661
NZ_VHIQ01000005.1 Paucihalobacter ruber strain CWB-1 Scaffold5, whole genome shotgun sequence 320,689
NZ_VHIQ01000006.1 Paucihalobacter ruber strain CWB-1 Scaffold6, whole genome shotgun sequence 317,926
NZ_VHIQ01000007.1 Paucihalobacter ruber strain CWB-1 Scaffold7, whole genome shotgun sequence 294,324
NZ_VHIQ01000008.1 Paucihalobacter ruber strain CWB-1 Scaffold8, whole genome shotgun sequence 171,533
NZ_VHIQ01000009.1 Paucihalobacter ruber strain CWB-1 Scaffold9, whole genome shotgun sequence 12,464
NZ_VHIQ01000010.1 Paucihalobacter ruber strain CWB-1 Scaffold10, whole genome shotgun sequence 11,844
NZ_VHIQ01000011.1 Paucihalobacter ruber strain CWB-1 Scaffold11, whole genome shotgun sequence 10,042
NZ_VHIQ01000012.1 Paucihalobacter ruber strain CWB-1 Scaffold12, whole genome shotgun sequence 5,552
NZ_VHIQ01000013.1 Paucihalobacter ruber strain CWB-1 Scaffold13, whole genome shotgun sequence 5,256
NZ_VHIQ01000014.1 Paucihalobacter ruber strain CWB-1 Scaffold14, whole genome shotgun sequence 4,928
NZ_VHIQ01000015.1 Paucihalobacter ruber strain CWB-1 Scaffold15, whole genome shotgun sequence 4,129
NZ_VHIQ01000016.1 Paucihalobacter ruber strain CWB-1 Scaffold16, whole genome shotgun sequence 3,462
NZ_VHIQ01000017.1 Paucihalobacter ruber strain CWB-1 Scaffold17, whole genome shotgun sequence 1,329
NZ_VHIQ01000018.1 Paucihalobacter ruber strain CWB-1 Scaffold18, whole genome shotgun sequence 1,328
NZ_VHIQ01000019.1 Paucihalobacter ruber strain CWB-1 Scaffold19, whole genome shotgun sequence 858
NZ_VHIQ01000020.1 Paucihalobacter ruber strain CWB-1 Scaffold20, whole genome shotgun sequence 571

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory