fast.genomicscompare 6,575 genera of bacteria & archaea

 

Campylobacter_D sp006864535 MIT 12-8780

Genome identifier: GCF_006864535.1

NCBI assembly name: ASM686453v1

GTDB taxonomy: Bacteria, Campylobacterota, Campylobacteria, Campylobacterales, Campylobacteraceae, Campylobacter_D, Campylobacter_D sp006864535

NCBI taxonomy: Bacteria, Campylobacterota, Epsilonproteobacteria, Campylobacterales, Campylobacteraceae, Campylobacter

Scaffolds: 22

Genes: 1,935 Protein-coding: 1,863 RNAs: 46 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_QHLL01000001.1 Campylobacter sp. MIT 12-8780 accn213849_13_con_0001, whole genome shotgun sequence 301,809
NZ_QHLL01000002.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0002, whole genome shotgun sequence 246,179
NZ_QHLL01000003.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0003, whole genome shotgun sequence 222,062
NZ_QHLL01000004.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0004, whole genome shotgun sequence 193,000
NZ_QHLL01000005.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0005, whole genome shotgun sequence 158,168
NZ_QHLL01000006.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0006, whole genome shotgun sequence 141,096
NZ_QHLL01000007.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0007, whole genome shotgun sequence 139,868
NZ_QHLL01000008.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0008, whole genome shotgun sequence 81,902
NZ_QHLL01000009.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0009, whole genome shotgun sequence 80,599
NZ_QHLL01000010.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0010, whole genome shotgun sequence 74,144
NZ_QHLL01000011.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0011, whole genome shotgun sequence 69,599
NZ_QHLL01000012.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0012, whole genome shotgun sequence 53,291
NZ_QHLL01000013.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0013, whole genome shotgun sequence 40,558
NZ_QHLL01000014.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0014, whole genome shotgun sequence 39,824
NZ_QHLL01000015.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0015, whole genome shotgun sequence 18,983
NZ_QHLL01000016.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0016, whole genome shotgun sequence 6,468
NZ_QHLL01000017.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0017, whole genome shotgun sequence 2,426
NZ_QHLL01000018.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0018, whole genome shotgun sequence 1,976
NZ_QHLL01000019.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0019, whole genome shotgun sequence 1,796
NZ_QHLL01000020.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0020, whole genome shotgun sequence 868
NZ_QHLL01000021.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0021, whole genome shotgun sequence 547
NZ_QHLL01000022.1 Campylobacter sp. MIT 12-8780 accn_213849_13_con_0022, whole genome shotgun sequence 341

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory