fast.genomicscompare 6,575 genera of bacteria & archaea

 

Glacieibacterium frigidum LB1R16

Genome identifier: GCF_007097155.1

NCBI assembly name: ASM709715v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingomonadaceae, Glacieibacterium, Glacieibacterium frigidum

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Sphingomonadales, Sphingosinicellaceae, Glacieibacterium, Glacieibacterium frigidum

Scaffolds: 3

Genes: 3,357 Protein-coding: 3,292 RNAs: 54 pseudogenes: 11

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VJWA01000001.1 Glacieibacterium frigidum strain LB1R16 NODE_1_length_1948859_cov_164.405992, whole genome shotgun sequence 1,948,859
NZ_VJWA01000002.1 Glacieibacterium frigidum strain LB1R16 NODE_2_length_1478873_cov_170.812718, whole genome shotgun sequence 1,478,873
NZ_VJWA01000003.1 Glacieibacterium frigidum strain LB1R16 NODE_3_length_1119_cov_1.825336, whole genome shotgun sequence 1,119

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory