fast.genomicscompare 6,575 genera of bacteria & archaea

 

Pseudomonas_T mangiferae DMKU BBB3-04

Genome identifier: GCF_007109405.1

NCBI assembly name: ASM710940v1

GTDB taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudomonadaceae, Pseudomonas_T, Pseudomonas_T mangiferae

NCBI taxonomy: Bacteria, Pseudomonadota, Gammaproteobacteria, Pseudomonadales, Pseudomonadaceae, Pseudomonas, Pseudomonas mangiferae

Scaffolds: 41

Genes: 4,307 Protein-coding: 4,195 RNAs: 57 pseudogenes: 55

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VJOY01000001.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_1_length_594779_cov_45.8115, whole genome shotgun sequence 594,779
NZ_VJOY01000002.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_2_length_441793_cov_49.0152, whole genome shotgun sequence 441,793
NZ_VJOY01000003.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_3_length_380147_cov_46.9382, whole genome shotgun sequence 380,147
NZ_VJOY01000004.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_4_length_374715_cov_47.8064, whole genome shotgun sequence 374,715
NZ_VJOY01000005.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_5_length_305439_cov_48.7269, whole genome shotgun sequence 305,439
NZ_VJOY01000006.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_6_length_301985_cov_46.2127, whole genome shotgun sequence 301,985
NZ_VJOY01000007.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_7_length_281122_cov_48.8022, whole genome shotgun sequence 281,122
NZ_VJOY01000008.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_8_length_228566_cov_47.8864, whole genome shotgun sequence 228,566
NZ_VJOY01000009.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_9_length_223612_cov_48.7464, whole genome shotgun sequence 223,612
NZ_VJOY01000010.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_10_length_217961_cov_49.5095, whole genome shotgun sequence 217,961
NZ_VJOY01000011.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_11_length_154251_cov_49.0569, whole genome shotgun sequence 154,251
NZ_VJOY01000012.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_12_length_136488_cov_47.2999, whole genome shotgun sequence 136,488
NZ_VJOY01000013.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_13_length_100094_cov_45.3796, whole genome shotgun sequence 100,094
NZ_VJOY01000014.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_14_length_94764_cov_45.8787, whole genome shotgun sequence 94,764
NZ_VJOY01000015.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_15_length_83481_cov_45.6657, whole genome shotgun sequence 83,481
NZ_VJOY01000016.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_16_length_78475_cov_44.3985, whole genome shotgun sequence 78,475
NZ_VJOY01000017.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_17_length_74165_cov_46.7398, whole genome shotgun sequence 74,165
NZ_VJOY01000018.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_18_length_66964_cov_47.8496, whole genome shotgun sequence 66,964
NZ_VJOY01000019.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_19_length_66738_cov_48.9202, whole genome shotgun sequence 66,738
NZ_VJOY01000020.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_20_length_54224_cov_45.114, whole genome shotgun sequence 54,224
NZ_VJOY01000021.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_21_length_49842_cov_53.9359, whole genome shotgun sequence 49,842
NZ_VJOY01000022.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_22_length_40672_cov_50.4098, whole genome shotgun sequence 40,672
NZ_VJOY01000023.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_23_length_38836_cov_48.8255, whole genome shotgun sequence 38,836
NZ_VJOY01000024.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_24_length_38457_cov_49.5954, whole genome shotgun sequence 38,457
NZ_VJOY01000025.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_25_length_37192_cov_46.549, whole genome shotgun sequence 37,192
NZ_VJOY01000026.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_26_length_36006_cov_50.7555, whole genome shotgun sequence 36,006
NZ_VJOY01000027.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_27_length_30245_cov_44.0826, whole genome shotgun sequence 30,245
NZ_VJOY01000028.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_28_length_25755_cov_50.8426, whole genome shotgun sequence 25,755
NZ_VJOY01000029.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_29_length_25037_cov_52.698, whole genome shotgun sequence 25,037
NZ_VJOY01000030.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_30_length_18115_cov_45.4291, whole genome shotgun sequence 18,115
NZ_VJOY01000031.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_31_length_18041_cov_38.5639, whole genome shotgun sequence 18,041
NZ_VJOY01000032.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_32_length_17895_cov_48.9304, whole genome shotgun sequence 17,895
NZ_VJOY01000033.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_33_length_12959_cov_43.0995, whole genome shotgun sequence 12,959
NZ_VJOY01000034.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_34_length_8152_cov_44.2173, whole genome shotgun sequence 8,152
NZ_VJOY01000035.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_35_length_5632_cov_211.675, whole genome shotgun sequence 5,632
NZ_VJOY01000036.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_36_length_4397_cov_46.8295, whole genome shotgun sequence 4,397
NZ_VJOY01000037.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_37_length_4004_cov_44.5762, whole genome shotgun sequence 4,004
NZ_VJOY01000038.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_38_length_3943_cov_41.865, whole genome shotgun sequence 3,943
NZ_VJOY01000039.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_39_length_2468_cov_33.3293, whole genome shotgun sequence 2,468
NZ_VJOY01000040.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_40_length_2212_cov_35.1329, whole genome shotgun sequence 2,212
NZ_VJOY01000041.1 Pseudomonas mangiferae strain DMKU BBB3-04 NODE_41_length_1213_cov_80.5378, whole genome shotgun sequence 1,213

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory