fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhodoligotrophos appendicifer 120-1

Genome identifier: GCF_007474605.1

NCBI assembly name: ASM747460v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Im1, Rhodoligotrophos, Rhodoligotrophos appendicifer

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Parvibaculaceae, Rhodoligotrophos, Rhodoligotrophos appendicifer

Scaffolds: 33

Genes: 5,265 Protein-coding: 5,137 RNAs: 54 pseudogenes: 74

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VHKL01000001.1 Rhodoligotrophos appendicifer strain 120-1 scaffold1.1-size862381, whole genome shotgun sequence 862,381
NZ_VHKL01000002.1 Rhodoligotrophos appendicifer strain 120-1 scaffold2.1-size595509, whole genome shotgun sequence 595,509
NZ_VHKL01000003.1 Rhodoligotrophos appendicifer strain 120-1 scaffold3.1-size529292, whole genome shotgun sequence 529,292
NZ_VHKL01000004.1 Rhodoligotrophos appendicifer strain 120-1 scaffold4.1-size500918, whole genome shotgun sequence 500,918
NZ_VHKL01000005.1 Rhodoligotrophos appendicifer strain 120-1 scaffold5.1-size478873, whole genome shotgun sequence 478,873
NZ_VHKL01000006.1 Rhodoligotrophos appendicifer strain 120-1 scaffold6.1-size380188, whole genome shotgun sequence 380,188
NZ_VHKL01000007.1 Rhodoligotrophos appendicifer strain 120-1 scaffold7.1-size372463, whole genome shotgun sequence 372,463
NZ_VHKL01000008.1 Rhodoligotrophos appendicifer strain 120-1 scaffold8.1-size333015, whole genome shotgun sequence 333,015
NZ_VHKL01000009.1 Rhodoligotrophos appendicifer strain 120-1 scaffold9.1-size366865, whole genome shotgun sequence 366,865
NZ_VHKL01000010.1 Rhodoligotrophos appendicifer strain 120-1 scaffold10.1-size251107, whole genome shotgun sequence 251,107
NZ_VHKL01000011.1 Rhodoligotrophos appendicifer strain 120-1 scaffold11.1-size231437, whole genome shotgun sequence 231,437
NZ_VHKL01000012.1 Rhodoligotrophos appendicifer strain 120-1 scaffold12.1-size85036, whole genome shotgun sequence 85,036
NZ_VHKL01000013.1 Rhodoligotrophos appendicifer strain 120-1 scaffold13.1-size82717, whole genome shotgun sequence 82,717
NZ_VHKL01000014.1 Rhodoligotrophos appendicifer strain 120-1 scaffold14.1-size76111, whole genome shotgun sequence 76,111
NZ_VHKL01000015.1 Rhodoligotrophos appendicifer strain 120-1 scaffold15.1-size75078, whole genome shotgun sequence 75,078
NZ_VHKL01000016.1 Rhodoligotrophos appendicifer strain 120-1 scaffold16.1-size65117, whole genome shotgun sequence 65,117
NZ_VHKL01000017.1 Rhodoligotrophos appendicifer strain 120-1 scaffold17.1-size64347, whole genome shotgun sequence 64,347
NZ_VHKL01000018.1 Rhodoligotrophos appendicifer strain 120-1 scaffold18.1-size58572, whole genome shotgun sequence 58,572
NZ_VHKL01000019.1 Rhodoligotrophos appendicifer strain 120-1 scaffold19.1-size49308, whole genome shotgun sequence 49,308
NZ_VHKL01000020.1 Rhodoligotrophos appendicifer strain 120-1 scaffold20.1-size47634, whole genome shotgun sequence 47,634
NZ_VHKL01000021.1 Rhodoligotrophos appendicifer strain 120-1 scaffold21.1-size38626, whole genome shotgun sequence 38,626
NZ_VHKL01000022.1 Rhodoligotrophos appendicifer strain 120-1 scaffold22.1-size8045, whole genome shotgun sequence 8,045
NZ_VHKL01000023.1 Rhodoligotrophos appendicifer strain 120-1 scaffold23.1-size6995, whole genome shotgun sequence 6,995
NZ_VHKL01000024.1 Rhodoligotrophos appendicifer strain 120-1 scaffold24.1-size6966, whole genome shotgun sequence 6,966
NZ_VHKL01000025.1 Rhodoligotrophos appendicifer strain 120-1 scaffold25.1-size8154, whole genome shotgun sequence 8,154
NZ_VHKL01000026.1 Rhodoligotrophos appendicifer strain 120-1 scaffold26.1-size4434, whole genome shotgun sequence 4,434
NZ_VHKL01000027.1 Rhodoligotrophos appendicifer strain 120-1 scaffold27.1-size4463, whole genome shotgun sequence 4,463
NZ_VHKL01000028.1 Rhodoligotrophos appendicifer strain 120-1 scaffold28.1-size2608, whole genome shotgun sequence 2,608
NZ_VHKL01000029.1 Rhodoligotrophos appendicifer strain 120-1 scaffold29.1-size2484, whole genome shotgun sequence 2,484
NZ_VHKL01000030.1 Rhodoligotrophos appendicifer strain 120-1 scaffold30.1-size1692, whole genome shotgun sequence 1,692
NZ_VHKL01000031.1 Rhodoligotrophos appendicifer strain 120-1 scaffold31.1-size1612, whole genome shotgun sequence 1,612
NZ_VHKL01000032.1 Rhodoligotrophos appendicifer strain 120-1 scaffold32.1-size935, whole genome shotgun sequence 935
NZ_VHKL01000033.1 Rhodoligotrophos appendicifer strain 120-1 scaffold33.1-size533, whole genome shotgun sequence 533

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory