fast.genomicscompare 6,575 genera of bacteria & archaea

 

VLJP01 sp007829525 J18

Genome identifier: GCF_007829525.1

NCBI assembly name: ASM782952v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Rhizobiaceae, VLJP01, VLJP01 sp007829525

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Phyllobacteriaceae, Mesorhizobium

Scaffolds: 94

Genes: 4,283 Protein-coding: 4,136 RNAs: 56 pseudogenes: 91

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VLJP01000001.1 Mesorhizobium sp. J18 MesJ18_scaffold_0, whole genome shotgun sequence 313,970
NZ_VLJP01000002.1 Mesorhizobium sp. J18 MesJ18_scaffold_9, whole genome shotgun sequence 110,067
NZ_VLJP01000003.1 Mesorhizobium sp. J18 MesJ18_scaffold_10, whole genome shotgun sequence 102,426
NZ_VLJP01000004.1 Mesorhizobium sp. J18 MesJ18_scaffold_11, whole genome shotgun sequence 100,849
NZ_VLJP01000005.1 Mesorhizobium sp. J18 MesJ18_scaffold_12, whole genome shotgun sequence 95,837
NZ_VLJP01000006.1 Mesorhizobium sp. J18 MesJ18_scaffold_13, whole genome shotgun sequence 94,597
NZ_VLJP01000007.1 Mesorhizobium sp. J18 MesJ18_scaffold_14, whole genome shotgun sequence 92,708
NZ_VLJP01000008.1 Mesorhizobium sp. J18 MesJ18_scaffold_15, whole genome shotgun sequence 90,321
NZ_VLJP01000009.1 Mesorhizobium sp. J18 MesJ18_scaffold_16, whole genome shotgun sequence 90,043
NZ_VLJP01000010.1 Mesorhizobium sp. J18 MesJ18_scaffold_17, whole genome shotgun sequence 82,839
NZ_VLJP01000011.1 Mesorhizobium sp. J18 MesJ18_scaffold_18, whole genome shotgun sequence 75,195
NZ_VLJP01000012.1 Mesorhizobium sp. J18 MesJ18_scaffold_1, whole genome shotgun sequence 254,093
NZ_VLJP01000013.1 Mesorhizobium sp. J18 MesJ18_scaffold_19, whole genome shotgun sequence 73,771
NZ_VLJP01000014.1 Mesorhizobium sp. J18 MesJ18_scaffold_20, whole genome shotgun sequence 62,303
NZ_VLJP01000015.1 Mesorhizobium sp. J18 MesJ18_scaffold_21, whole genome shotgun sequence 61,362
NZ_VLJP01000016.1 Mesorhizobium sp. J18 MesJ18_scaffold_22, whole genome shotgun sequence 61,562
NZ_VLJP01000017.1 Mesorhizobium sp. J18 MesJ18_scaffold_23, whole genome shotgun sequence 59,319
NZ_VLJP01000018.1 Mesorhizobium sp. J18 MesJ18_scaffold_24, whole genome shotgun sequence 53,963
NZ_VLJP01000019.1 Mesorhizobium sp. J18 MesJ18_scaffold_25, whole genome shotgun sequence 51,951
NZ_VLJP01000020.1 Mesorhizobium sp. J18 MesJ18_scaffold_26, whole genome shotgun sequence 47,999
NZ_VLJP01000021.1 Mesorhizobium sp. J18 MesJ18_scaffold_27, whole genome shotgun sequence 44,451
NZ_VLJP01000022.1 Mesorhizobium sp. J18 MesJ18_scaffold_28, whole genome shotgun sequence 42,511
NZ_VLJP01000023.1 Mesorhizobium sp. J18 MesJ18_scaffold_2, whole genome shotgun sequence 216,503
NZ_VLJP01000024.1 Mesorhizobium sp. J18 MesJ18_scaffold_29, whole genome shotgun sequence 41,907
NZ_VLJP01000025.1 Mesorhizobium sp. J18 MesJ18_scaffold_30, whole genome shotgun sequence 41,202
NZ_VLJP01000026.1 Mesorhizobium sp. J18 MesJ18_scaffold_31, whole genome shotgun sequence 40,798
NZ_VLJP01000027.1 Mesorhizobium sp. J18 MesJ18_scaffold_32, whole genome shotgun sequence 40,663
NZ_VLJP01000028.1 Mesorhizobium sp. J18 MesJ18_scaffold_33, whole genome shotgun sequence 40,500
NZ_VLJP01000029.1 Mesorhizobium sp. J18 MesJ18_scaffold_34, whole genome shotgun sequence 39,212
NZ_VLJP01000030.1 Mesorhizobium sp. J18 MesJ18_scaffold_35, whole genome shotgun sequence 39,086
NZ_VLJP01000031.1 Mesorhizobium sp. J18 MesJ18_scaffold_36, whole genome shotgun sequence 38,658
NZ_VLJP01000032.1 Mesorhizobium sp. J18 MesJ18_scaffold_37, whole genome shotgun sequence 38,579
NZ_VLJP01000033.1 Mesorhizobium sp. J18 MesJ18_scaffold_38, whole genome shotgun sequence 36,626
NZ_VLJP01000034.1 Mesorhizobium sp. J18 MesJ18_scaffold_3, whole genome shotgun sequence 164,820
NZ_VLJP01000035.1 Mesorhizobium sp. J18 MesJ18_scaffold_39, whole genome shotgun sequence 34,379
NZ_VLJP01000036.1 Mesorhizobium sp. J18 MesJ18_scaffold_40, whole genome shotgun sequence 33,175
NZ_VLJP01000037.1 Mesorhizobium sp. J18 MesJ18_scaffold_41, whole genome shotgun sequence 32,053
NZ_VLJP01000038.1 Mesorhizobium sp. J18 MesJ18_scaffold_42, whole genome shotgun sequence 29,306
NZ_VLJP01000039.1 Mesorhizobium sp. J18 MesJ18_scaffold_43, whole genome shotgun sequence 29,019
NZ_VLJP01000040.1 Mesorhizobium sp. J18 MesJ18_scaffold_44, whole genome shotgun sequence 27,960
NZ_VLJP01000041.1 Mesorhizobium sp. J18 MesJ18_scaffold_45, whole genome shotgun sequence 27,179
NZ_VLJP01000042.1 Mesorhizobium sp. J18 MesJ18_scaffold_46, whole genome shotgun sequence 26,335
NZ_VLJP01000043.1 Mesorhizobium sp. J18 MesJ18_scaffold_47, whole genome shotgun sequence 23,586
NZ_VLJP01000044.1 Mesorhizobium sp. J18 MesJ18_scaffold_48, whole genome shotgun sequence 23,544
NZ_VLJP01000045.1 Mesorhizobium sp. J18 MesJ18_scaffold_4, whole genome shotgun sequence 164,786
NZ_VLJP01000046.1 Mesorhizobium sp. J18 MesJ18_scaffold_49, whole genome shotgun sequence 23,382
NZ_VLJP01000047.1 Mesorhizobium sp. J18 MesJ18_scaffold_50, whole genome shotgun sequence 23,192
NZ_VLJP01000048.1 Mesorhizobium sp. J18 MesJ18_scaffold_51, whole genome shotgun sequence 19,649
NZ_VLJP01000049.1 Mesorhizobium sp. J18 MesJ18_scaffold_52, whole genome shotgun sequence 18,399
NZ_VLJP01000050.1 Mesorhizobium sp. J18 MesJ18_scaffold_53, whole genome shotgun sequence 17,640
NZ_VLJP01000051.1 Mesorhizobium sp. J18 MesJ18_scaffold_54, whole genome shotgun sequence 17,125
NZ_VLJP01000052.1 Mesorhizobium sp. J18 MesJ18_scaffold_55, whole genome shotgun sequence 16,852
NZ_VLJP01000053.1 Mesorhizobium sp. J18 MesJ18_scaffold_56, whole genome shotgun sequence 16,647
NZ_VLJP01000054.1 Mesorhizobium sp. J18 MesJ18_scaffold_57, whole genome shotgun sequence 15,158
NZ_VLJP01000055.1 Mesorhizobium sp. J18 MesJ18_scaffold_58, whole genome shotgun sequence 13,949
NZ_VLJP01000056.1 Mesorhizobium sp. J18 MesJ18_scaffold_5, whole genome shotgun sequence 143,860
NZ_VLJP01000057.1 Mesorhizobium sp. J18 MesJ18_scaffold_59, whole genome shotgun sequence 14,000
NZ_VLJP01000058.1 Mesorhizobium sp. J18 MesJ18_scaffold_60, whole genome shotgun sequence 13,635
NZ_VLJP01000059.1 Mesorhizobium sp. J18 MesJ18_scaffold_61, whole genome shotgun sequence 13,629
NZ_VLJP01000060.1 Mesorhizobium sp. J18 MesJ18_scaffold_62, whole genome shotgun sequence 13,212
NZ_VLJP01000061.1 Mesorhizobium sp. J18 MesJ18_scaffold_63, whole genome shotgun sequence 13,017
NZ_VLJP01000062.1 Mesorhizobium sp. J18 MesJ18_scaffold_64, whole genome shotgun sequence 12,845
NZ_VLJP01000063.1 Mesorhizobium sp. J18 MesJ18_scaffold_65, whole genome shotgun sequence 12,642
NZ_VLJP01000064.1 Mesorhizobium sp. J18 MesJ18_scaffold_66, whole genome shotgun sequence 12,544
NZ_VLJP01000065.1 Mesorhizobium sp. J18 MesJ18_scaffold_67, whole genome shotgun sequence 11,784
NZ_VLJP01000066.1 Mesorhizobium sp. J18 MesJ18_scaffold_68, whole genome shotgun sequence 11,704
NZ_VLJP01000067.1 Mesorhizobium sp. J18 MesJ18_scaffold_6, whole genome shotgun sequence 141,199
NZ_VLJP01000068.1 Mesorhizobium sp. J18 MesJ18_scaffold_69, whole genome shotgun sequence 10,973
NZ_VLJP01000069.1 Mesorhizobium sp. J18 MesJ18_scaffold_70, whole genome shotgun sequence 10,934
NZ_VLJP01000070.1 Mesorhizobium sp. J18 MesJ18_scaffold_71, whole genome shotgun sequence 10,559
NZ_VLJP01000071.1 Mesorhizobium sp. J18 MesJ18_scaffold_72, whole genome shotgun sequence 8,998
NZ_VLJP01000072.1 Mesorhizobium sp. J18 MesJ18_scaffold_73, whole genome shotgun sequence 7,759
NZ_VLJP01000073.1 Mesorhizobium sp. J18 MesJ18_scaffold_74, whole genome shotgun sequence 6,516
NZ_VLJP01000074.1 Mesorhizobium sp. J18 MesJ18_scaffold_75, whole genome shotgun sequence 6,124
NZ_VLJP01000075.1 Mesorhizobium sp. J18 MesJ18_scaffold_76, whole genome shotgun sequence 5,785
NZ_VLJP01000076.1 Mesorhizobium sp. J18 MesJ18_scaffold_77, whole genome shotgun sequence 5,375
NZ_VLJP01000077.1 Mesorhizobium sp. J18 MesJ18_scaffold_78, whole genome shotgun sequence 4,888
NZ_VLJP01000078.1 Mesorhizobium sp. J18 MesJ18_scaffold_7, whole genome shotgun sequence 135,379
NZ_VLJP01000079.1 Mesorhizobium sp. J18 MesJ18_scaffold_79, whole genome shotgun sequence 4,636
NZ_VLJP01000080.1 Mesorhizobium sp. J18 MesJ18_scaffold_80, whole genome shotgun sequence 4,190
NZ_VLJP01000081.1 Mesorhizobium sp. J18 MesJ18_scaffold_81, whole genome shotgun sequence 3,876
NZ_VLJP01000082.1 Mesorhizobium sp. J18 MesJ18_scaffold_82, whole genome shotgun sequence 3,856
NZ_VLJP01000083.1 Mesorhizobium sp. J18 MesJ18_scaffold_83, whole genome shotgun sequence 3,846
NZ_VLJP01000084.1 Mesorhizobium sp. J18 MesJ18_scaffold_84, whole genome shotgun sequence 3,589
NZ_VLJP01000085.1 Mesorhizobium sp. J18 MesJ18_scaffold_85, whole genome shotgun sequence 3,444
NZ_VLJP01000086.1 Mesorhizobium sp. J18 MesJ18_scaffold_86, whole genome shotgun sequence 3,072
NZ_VLJP01000087.1 Mesorhizobium sp. J18 MesJ18_scaffold_87, whole genome shotgun sequence 2,207
NZ_VLJP01000088.1 Mesorhizobium sp. J18 MesJ18_scaffold_88, whole genome shotgun sequence 2,011
NZ_VLJP01000089.1 Mesorhizobium sp. J18 MesJ18_scaffold_8, whole genome shotgun sequence 117,105
NZ_VLJP01000090.1 Mesorhizobium sp. J18 MesJ18_scaffold_89, whole genome shotgun sequence 1,497
NZ_VLJP01000091.1 Mesorhizobium sp. J18 MesJ18_scaffold_90, whole genome shotgun sequence 1,323
NZ_VLJP01000092.1 Mesorhizobium sp. J18 MesJ18_scaffold_91, whole genome shotgun sequence 1,125
NZ_VLJP01000093.1 Mesorhizobium sp. J18 MesJ18_scaffold_92, whole genome shotgun sequence 1,086
NZ_VLJP01000094.1 Mesorhizobium sp. J18 MesJ18_scaffold_93, whole genome shotgun sequence 1,066

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory