fast.genomicscompare 6,575 genera of bacteria & archaea

 

Shimia_B ponticola WX04

Genome identifier: GCF_007995215.1

NCBI assembly name: ASM799521v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Shimia_B, Shimia_B ponticola

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Roseobacteraceae, Shimia, Shimia ponticola

Scaffolds: 12

Genes: 3,733 Protein-coding: 3,677 RNAs: 47 pseudogenes: 9

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VCDK01000001.1 Shimia ponticola strain WX04 contig1, whole genome shotgun sequence 261,622
NZ_VCDK01000002.1 Shimia ponticola strain WX04 contig2, whole genome shotgun sequence 448,431
NZ_VCDK01000003.1 Shimia ponticola strain WX04 contig3, whole genome shotgun sequence 1,389,071
NZ_VCDK01000004.1 Shimia ponticola strain WX04 contig4, whole genome shotgun sequence 6,125
NZ_VCDK01000005.1 Shimia ponticola strain WX04 contig5, whole genome shotgun sequence 673,122
NZ_VCDK01000006.1 Shimia ponticola strain WX04 contig6, whole genome shotgun sequence 648,124
NZ_VCDK01000007.1 Shimia ponticola strain WX04 contig7, whole genome shotgun sequence 91,481
NZ_VCDK01000008.1 Shimia ponticola strain WX04 contig8, whole genome shotgun sequence 76,004
NZ_VCDK01000009.1 Shimia ponticola strain WX04 contig9, whole genome shotgun sequence 54,394
NZ_VCDK01000010.1 Shimia ponticola strain WX04 contig10, whole genome shotgun sequence 47,731
NZ_VCDK01000011.1 Shimia ponticola strain WX04 contig11, whole genome shotgun sequence 47,306
NZ_VCDK01000012.1 Shimia ponticola strain WX04 contig12, whole genome shotgun sequence 38,070

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory