fast.genomicscompare 6,575 genera of bacteria & archaea

 

Rhabdaerophilum calidifontis SYSU G02060

Genome identifier: GCF_008641065.1

NCBI assembly name: ASM864106v1

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhizobiales, Beijerinckiaceae, Rhabdaerophilum, Rhabdaerophilum calidifontis

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Hyphomicrobiales, Rhabdaerophilaceae, Rhabdaerophilum, Rhabdaerophilum calidifontis

Scaffolds: 19

Genes: 2,927 Protein-coding: 2,849 RNAs: 52 pseudogenes: 26

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_VTRS01000001.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold1_1, whole genome shotgun sequence 981,230
NZ_VTRS01000002.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold2_1, whole genome shotgun sequence 391,809
NZ_VTRS01000003.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold3_1, whole genome shotgun sequence 379,575
NZ_VTRS01000004.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold4_1, whole genome shotgun sequence 246,306
NZ_VTRS01000005.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold5_1, whole genome shotgun sequence 237,492
NZ_VTRS01000006.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold6_1, whole genome shotgun sequence 208,244
NZ_VTRS01000007.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold7_1, whole genome shotgun sequence 159,508
NZ_VTRS01000008.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold8_1, whole genome shotgun sequence 131,276
NZ_VTRS01000009.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold9_1, whole genome shotgun sequence 116,601
NZ_VTRS01000010.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold10_1, whole genome shotgun sequence 84,990
NZ_VTRS01000011.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold11_1, whole genome shotgun sequence 58,601
NZ_VTRS01000012.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold12_1, whole genome shotgun sequence 54,207
NZ_VTRS01000013.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold13_1, whole genome shotgun sequence 12,016
NZ_VTRS01000014.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold14_1, whole genome shotgun sequence 9,847
NZ_VTRS01000015.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold15_1, whole genome shotgun sequence 8,842
NZ_VTRS01000016.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold16_1, whole genome shotgun sequence 1,885
NZ_VTRS01000017.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold17_1, whole genome shotgun sequence 1,328
NZ_VTRS01000018.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold18_1, whole genome shotgun sequence 1,283
NZ_VTRS01000019.1 Rhabdaerophilum calidifontis strain SYSU G02060 Scaffold19_1, whole genome shotgun sequence 1,269

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory