fast.genomicscompare 6,575 genera of bacteria & archaea

 

Fertoeibacter niger RG-N-1a

Genome identifier: GCF_009380135.2

NCBI assembly name: ASM938013v2

GTDB taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Rhodobacteraceae, Fertoeibacter, Fertoeibacter niger

NCBI taxonomy: Bacteria, Pseudomonadota, Alphaproteobacteria, Rhodobacterales, Paracoccaceae, Fertoeibacter, Fertoeibacter niger

Scaffolds: 33

Genes: 4,208 Protein-coding: 4,117 RNAs: 51 pseudogenes: 40

Tools

BLAST

Search annotations:

Curated BLAST:

Examples: perchlorate or 1.2.1.88

GapMind for amino acid biosynthesis or carbon catabolism (takes 10-40 seconds)

Scaffolds

scaffoldId description length
NZ_WHUT02000001.1 Fertoeibacter niger strain RG-N-1a NODE_1_length_710307_cov_42.814907, whole genome shotgun sequence 710,307
NZ_WHUT02000002.1 Fertoeibacter niger strain RG-N-1a NODE_2_length_442308_cov_43.408688, whole genome shotgun sequence 442,308
NZ_WHUT02000003.1 Fertoeibacter niger strain RG-N-1a NODE_3_length_409678_cov_43.290611, whole genome shotgun sequence 409,678
NZ_WHUT02000004.1 Fertoeibacter niger strain RG-N-1a NODE_4_length_347239_cov_43.592135, whole genome shotgun sequence 347,239
NZ_WHUT02000005.1 Fertoeibacter niger strain RG-N-1a NODE_5_length_315027_cov_41.745610, whole genome shotgun sequence 315,027
NZ_WHUT02000006.1 Fertoeibacter niger strain RG-N-1a NODE_6_length_288620_cov_43.613360, whole genome shotgun sequence 288,620
NZ_WHUT02000007.1 Fertoeibacter niger strain RG-N-1a NODE_7_length_278609_cov_41.895430, whole genome shotgun sequence 278,609
NZ_WHUT02000008.1 Fertoeibacter niger strain RG-N-1a NODE_8_length_274875_cov_40.140303, whole genome shotgun sequence 274,875
NZ_WHUT02000009.1 Fertoeibacter niger strain RG-N-1a NODE_9_length_176372_cov_31.313632, whole genome shotgun sequence 176,372
NZ_WHUT02000010.1 Fertoeibacter niger strain RG-N-1a NODE_10_length_159111_cov_27.816780, whole genome shotgun sequence 159,111
NZ_WHUT02000011.1 Fertoeibacter niger strain RG-N-1a NODE_11_length_127302_cov_42.921062, whole genome shotgun sequence 127,302
NZ_WHUT02000012.1 Fertoeibacter niger strain RG-N-1a NODE_12_length_125290_cov_43.426676, whole genome shotgun sequence 125,290
NZ_WHUT02000013.1 Fertoeibacter niger strain RG-N-1a NODE_13_length_103356_cov_42.443025, whole genome shotgun sequence 103,356
NZ_WHUT02000014.1 Fertoeibacter niger strain RG-N-1a NODE_14_length_102586_cov_42.174655, whole genome shotgun sequence 102,586
NZ_WHUT02000015.1 Fertoeibacter niger strain RG-N-1a NODE_15_length_75202_cov_44.348611, whole genome shotgun sequence 75,202
NZ_WHUT02000016.1 Fertoeibacter niger strain RG-N-1a NODE_16_length_72765_cov_20.856783, whole genome shotgun sequence 72,765
NZ_WHUT02000017.1 Fertoeibacter niger strain RG-N-1a NODE_17_length_64712_cov_45.087404, whole genome shotgun sequence 64,712
NZ_WHUT02000018.1 Fertoeibacter niger strain RG-N-1a NODE_18_length_58372_cov_41.445669, whole genome shotgun sequence 58,372
NZ_WHUT02000019.1 Fertoeibacter niger strain RG-N-1a NODE_19_length_49672_cov_41.971319, whole genome shotgun sequence 49,672
NZ_WHUT02000020.1 Fertoeibacter niger strain RG-N-1a NODE_20_length_49301_cov_47.677696, whole genome shotgun sequence 49,301
NZ_WHUT02000021.1 Fertoeibacter niger strain RG-N-1a NODE_21_length_17335_cov_40.688982, whole genome shotgun sequence 17,335
NZ_WHUT02000022.1 Fertoeibacter niger strain RG-N-1a NODE_22_length_16144_cov_20.876007, whole genome shotgun sequence 16,144
NZ_WHUT02000023.1 Fertoeibacter niger strain RG-N-1a NODE_23_length_14473_cov_45.483898, whole genome shotgun sequence 14,473
NZ_WHUT02000024.1 Fertoeibacter niger strain RG-N-1a NODE_24_length_10353_cov_20.889106, whole genome shotgun sequence 10,353
NZ_WHUT02000025.1 Fertoeibacter niger strain RG-N-1a NODE_25_length_10096_cov_44.334938, whole genome shotgun sequence 10,096
NZ_WHUT02000026.1 Fertoeibacter niger strain RG-N-1a NODE_26_length_9013_cov_43.981657, whole genome shotgun sequence 9,013
NZ_WHUT02000027.1 Fertoeibacter niger strain RG-N-1a NODE_27_length_5649_cov_100.454183, whole genome shotgun sequence 5,649
NZ_WHUT02000028.1 Fertoeibacter niger strain RG-N-1a NODE_28_length_5291_cov_23.004260, whole genome shotgun sequence 5,291
NZ_WHUT02000029.1 Fertoeibacter niger strain RG-N-1a NODE_29_length_2169_cov_39.699314, whole genome shotgun sequence 2,169
NZ_WHUT02000030.1 Fertoeibacter niger strain RG-N-1a NODE_30_length_1657_cov_480.947712, whole genome shotgun sequence 1,657
NZ_WHUT02000031.1 Fertoeibacter niger strain RG-N-1a NODE_31_length_1484_cov_65.755343, whole genome shotgun sequence 1,484
NZ_WHUT02000032.1 Fertoeibacter niger strain RG-N-1a NODE_32_length_1470_cov_69.327625, whole genome shotgun sequence 1,470
NZ_WHUT02000033.1 Fertoeibacter niger strain RG-N-1a NODE_33_length_713_cov_97.196246, whole genome shotgun sequence 713

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory